Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0047 ATGGAATTGGATCTTGGCAAGCTCTTCATTGGAGGGATTTCATGGGATACCGATGAGGAGCGTCTCAGAGAATATTTTGGGAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGTGCAACAGGTCGAGCTCGTGGTTTTGGTTTTGTTGTCTTTTCTGATCCTGCTGTTGCAGAAAGAGTCATTGTGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAGGCCGTTCCTAGGGATGACCAGAATGCTATAAATAGACAGCCTGGTGGTGTCCTAGGATCTCCTGGTCCCGGACGCACGAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAAAACGATTTTAAGCAGTATTTCGATCAATTTGGTATAATTACCGATGTTGTTGTAATGTATGATCACAATACTCGGAGGCCAAGAGGTTTTGGCTTCATCTCTTATGATTCAGAAGATGCTGTGGATAGAGTTCTTCATAAAACATTTCACGAACTGAATGGAAAGATGGTCGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGGCCAAGCAGAAGCCCATTGATAGGATATAACTTCGGTTTAAATAGGGCAAGCATCTACCTAAATAGTTATGCTCAGGGTTTTAATATGAATCCAAGAGGAGGCTATGGAATCAGAATGGATGGTAGGTTTAGTCCACTTTCTAGTGGCAGAAGTGATTTTAATCAATTTGGTTCTGTTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGGCCAATGTATGGAGGGACGTCCAATTATGGGAACAGTCTAGGATATGGTAGGATATTAAGTCCTATCTACAGTGACAACAACTCAGGCAGATACACCACTCCTATTGGCTATAATAGCAGTGGCAACATGAGGGGTGATTCTCTCGTGAACTCAACTTCTCGCAATTTATGGGGAAATGGAGGCCTGAATAATACTAATACTACCATTAGCCAAGTCAACCCTGGTGCTTACTTGGGATCTGGAAGTGAGACTTTCGGTGTTTCGATTGGAAACAGTGGCATAAATCGGAGTCCACCAGTTCCAACTCAGGGTGGGGGCACTTCTGCTGCTTCAGGCTTTACTAATTGGAGCAATGCTTATGAAGGTGGAGGAGATAGTAACATAGGATCAGGAGAAGGAGGGTATGGAAGGAACATCAGCACAAATGTGACTCAATCCTCTTCCTTTGCTGCACCAGCTGGTGGTTATGAAGGATTCTATGGGGACTTGTATCGCAGTGGTTCGGTTTACAGTGACTCGACTTGGCGATCTGCTGCTTCTGAGATAGATGGTTCTAGCTCATTTGGTTATGGACTTGGTGGTATAGCATTAGATGATCCAGTAAAGACTTCCGAGGGTTTTATCGGAAACTACAATGTAACAAGTAGGCAACCTAATACAGGAATTGCTGCCTAG 1458 0.4362 MELDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNAINRQPGGVLGSPGPGRTKKIFVGGLPSTITENDFKQYFDQFGIITDVVVMYDHNTRRPRGFGFISYDSEDAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNFGLNRASIYLNSYAQGFNMNPRGGYGIRMDGRFSPLSSGRSDFNQFGSVGYGMGVNLDSGLRPMYGGTSNYGNSLGYGRILSPIYSDNNSGRYTTPIGYNSSGNMRGDSLVNSTSRNLWGNGGLNNTNTTISQVNPGAYLGSGSETFGVSIGNSGINRSPPVPTQGGGTSAASGFTNWSNAYEGGGDSNIGSGEGGYGRNISTNVTQSSSFAAPAGGYEGFYGDLYRSGSVYSDSTWRSAASEIDGSSSFGYGLGGIALDDPVKTSEGFIGNYNVTSRQPNTGIAA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0047 485 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lan11g0047 485 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lan11g0047 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lan11g0047 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Lan11g0047 485 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 485 - -
Lan11g0047 485 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan11g0047 485 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lan11g0047 485 Gene3D - 103 189 IPR012677 -
Lan11g0047 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan11g0047 485 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 485 - -
Lan11g0047 485 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Lan11g0047 485 MobiDBLite consensus disorder prediction 352 373 - -
Lan11g0047 485 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan11g0047 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lan11g0047 485 Gene3D - 6 88 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0047 Lan-Chr11 289845 293566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0047 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0047 K14411 - gmx:100805131 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1343 2 24181469 24185055 Lan11g0047 11 289845 293566 LSH
Lan11g0047 11 289845 293566 Lan9g1487 9 21535289 21538455 LSH
Lan2g1343 2 24181469 24185055 Lan11g0047 11 289845 293566 PCT
Lan9g1487 9 21535289 21538455 Lan11g0047 11 289845 293566 PCT
Lan11g0047 11 289845 293566 Lan2g1343 2 24181469 24185055 PCT
Lan11g0047 11 289845 293566 Lan9g1487 9 21535289 21538455 PCT