Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0045 ATGGACGCTTCTACCACTAACGAAACCCACTCAGCTTCACAACCAAATGACCCGAATCGAATCGGGCCGGGTCAGAACAATTCAGCTAGGTACAAGCTTATGTCGCCGTCTAAACTTCCGATCTCCAGGTCTCACTGCATCACCATACCTCCGGGACTCACTTCGACGTCGTTTTTAGACTCCCCTCTTCTCATTTCCAATATCAAGGTGGAGCCTTCTCCTACTACAGGGTCCTTTTCTAAGCTTCTTCAAACAGTGCATGGTTCCATGTCTTCTGCTGAGTCTGCTACATTTCCTGTAACCACTACATGCTTCAATAACAATACTATTGAGGAAAGAGAATCAAACATCTTTGAGTTTAAACCACACAATATATCAAACATGGTCCCTGCAGACTTCAACAACCATGTAAGTGAACAATCTATTCAAGCGGAATGTCCAGGAAAAGTTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGACATGTTTTCCTTCTAATGAATTAAGCATATCATCATCACCTGTTCAAATGGTTAGTTCTGGGGCTAGCACTCCTGTTGAAGTCGATTCAGACGAATTGAACCACAAAGGCAACACAGCCACTGTACTTCAAGCATCACAAATTGAGGAGGTTAAAGGCAGTGGACTTTCAGTTGCACCTGAGAGAGCATATGATGATGGATACAACTGGCGAAAATATGGGCAAAAACTTGTTAAAGGGAGTGAATTTCCACGCAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTTTTTGAACGCTCTCATGATGGTCAAATGACAGAGATAGTTTACAAAGGAACACATGATCATCCAAAACCTCAACCAAGCCGACGATACCCTGTTAGCAGTATTGTGTCTATGCATGAAGAGAAATCTGCTGAGCCCAACAGCACTGCAGACCTATCGCCTGTAGCAACAAATGATGATAGTCGAGAGGGTGCTGACAGGACTAATGACGAAGTTGATGATGATGATCCCTTCTCGAAGCGTAGAAAAATGGAGCTTGAATTTGCTGACACCACTCCTGTAGTTAAGCCTATCCGCGAGCCACGGGTTGTTGTACAAACTGTGAGTGAGGTTGATATATTGGATGATGGGTACCGTTGGCGCAAGTATGGGCAAAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACAAATGTTGGTTGCCCCGTTAGAAAACACGTTGAGAGAGCATCACATGATCCAAAAGCAGTGATAACGACATATGAGGGTAAACACAATCATGATGTACCGCCTTCAAGAAATAGCAGCCATGATGTGGCAGGACCAGCAAGTGTAGGTTGTGGACAAACAAGAATCAAGTTACAAGAAAGTGATACTATTAGCCTCGACCTTGGCATGGGAATAAGCTCAGCTGCTGAAAATAGATCAAATGGGCAAGGGAAAATGCTGCTCTCTGAATTTGGCAGCATCCAAACTCAAACCAGCAATTCCAACTTCAACTTTGTTCATACTACTGCAGGTCCGGGATACTTCGGTGTTCTAAATAATGGCGCAAACCCATATAGTTCGATAGAAACAAGAAGTGATGGCCCATCTTTAAACCATGCCTCATCATATCCTTGCTCACAAAACGTTGGAAGAATACTAACTGGTCCATGA 1674 0.4343 MDASTTNETHSASQPNDPNRIGPGQNNSARYKLMSPSKLPISRSHCITIPPGLTSTSFLDSPLLISNIKVEPSPTTGSFSKLLQTVHGSMSSAESATFPVTTTCFNNNTIEERESNIFEFKPHNISNMVPADFNNHVSEQSIQAECPGKVQSFASSPLVESETCFPSNELSISSSPVQMVSSGASTPVEVDSDELNHKGNTATVLQASQIEEVKGSGLSVAPERAYDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQMTEIVYKGTHDHPKPQPSRRYPVSSIVSMHEEKSAEPNSTADLSPVATNDDSREGADRTNDEVDDDDPFSKRRKMELEFADTTPVVKPIREPRVVVQTVSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPPSRNSSHDVAGPASVGCGQTRIKLQESDTISLDLGMGISSAAENRSNGQGKMLLSEFGSIQTQTSNSNFNFVHTTAGPGYFGVLNNGANPYSSIETRSDGPSLNHASSYPCSQNVGRILTGP* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0045 557 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 25 304 - -
Lan11g0045 557 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 304 536 - -
Lan11g0045 557 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 MobiDBLite consensus disorder prediction 321 342 - -
Lan11g0045 557 Gene3D WRKY domain 219 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 SUPERFAMILY WRKY DNA-binding domain 224 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 MobiDBLite consensus disorder prediction 301 317 - -
Lan11g0045 557 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 MobiDBLite consensus disorder prediction 428 450 - -
Lan11g0045 557 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 MobiDBLite consensus disorder prediction 299 342 - -
Lan11g0045 557 ProSiteProfiles WRKY domain profile. 221 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan11g0045 557 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 304 536 IPR044810 GO:0003700
Lan11g0045 557 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 304 IPR044810 GO:0003700
Lan11g0045 557 MobiDBLite consensus disorder prediction 1 31 - -
Lan11g0045 557 Gene3D WRKY domain 362 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0045 Lan-Chr11 280972 285047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0045 34 557 WRKY Transcription Factor Family AT4G26640 52.065 2.29e-166 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan11g0045 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0045 - - lang:109360250 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1346 2 24203334 24210658 Lan11g0045 11 280972 285047 LSH
Lan6g1633 6 25139134 25146254 Lan11g0045 11 280972 285047 PCT
Lan2g1346 2 24203334 24210658 Lan11g0045 11 280972 285047 PCT
Lan11g0045 11 280972 285047 Lan6g1633 6 25139134 25146254 PCT
Lan11g0045 11 280972 285047 Lan2g1346 2 24203334 24210658 PCT