LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0043	ATGGATATTTCAGACTATAGAAGGGTTGTCTTTGACAAAATTCATAAATTTGAGCCTGAATATGCTTTAAAGATTCTTGGATACCTTCTATTACAAGACAATGGTGAGCAAGAAATGGCTAAGTTGGCTTCATGCCACGACCATTTCATCCGCGAAGTAGCATTTAAGGCGAAAATGGTCCTTCAGGGATTGGCTGCTAAACCTGTCCTATTTCCAATCTCACCTCCCCTCAACAATGAACAAGGTTTGAGCCATTTATCAGCAATCTCTCCAACAACGCCTACTTCGCCACCAAGCTTTCAGGTTCCCTCCCCGTATTGGAATCCACATTCTGTGAGCAACACCAATCCAGACACAGTTAAGAAGCAGTCACAGGTGTTCAGTTTGGAGAGTTGCATAGAGCCTGTAAATACTGAGATTGGAGGGATCGGTCATGATTACTTTGGCTTAGATGCTTCTGCTGTCAATTTCGGTGTAGAAGTTGGAAGAAGGCATTCAAGGCTGTCTGAATTTCCAGTCAAAACATGCCACTATTTCAACAAGGGGTTCTGTAAGCATGGAAGTAGCTGTAGATACTATCATGGTCTACTTGTCTCAGAGAGCTTCCCTCAGATGTATGGAAATGATGCTATAAATGAGGGTCAGATGTTTTCACCCGGGTCACTGGCACAGTTAGAAACAGAAATTGTTGAGCTCTTAAAGCCAAGAAGAGGAAGTCCACTGTCAATTGCATTGCTGCCGATGGCATATCACGAAAAATATAACAAGGTACTGCAGGCTGATGGTTACTTAACTGAGAGCCAGAGACATGGCAAGTCTGGCTTTAGTTTGACAAAGCTTCTTGCCAGATTGAAAAATAGTATTCAGCTGATAGACAGACCTCATGGGCAGCATGCAGTGGTTCTGGCAGAAGATGCTCCAAAATACATGCAGAAGGGAGATTTTGGTCAGAGTATTAGTGCATCGCGGCAGATATATTTGACATTTCCAGCTGAAAGCACTTTCACAGAGGAAGATGTCTCAAACTATTTCAACACATTTGGGTGGGTTGAAGATGTAAGGATTCCTTGTCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTGATCCAGAAACTGTTCAAACGATTTTGGAAAAGGGGAATCCTCATTATGTTCATGGGTCTCGGGTGCTTGTGAAACCTTATCGAGAGAAGGCAAAGGTTGTTGACAGGAAGTTCCCTGATAGGATTAAGCACCCTATCTGTTATTCACCACACTATGTAGATATCGACCAAGAATATCCCTTGATTTCAAGAAGTTGTGGAAACCATAGTTCTCTAATGACACAGCTGATGGAAGAAGATGATAAGGCCCTTCAGCAGAAGAGATGCCTTGCAGAGCTGCACTTTGCTAAAATTTCTTTGTCGAGTTCACCCCAATTTAGCCTCTCCATGGATGGGTCAAGGGTTTCAGATGATGGCTTCAATTTCAAGCCTGCAGAATCTTTCAGCTATGCGCTGAATGAAAAACCTAAGCAGACATACTCCAATTCCTCTGATGAGAACAGCAGTCAACAACTCAATCTCCCGGACAGTCCATTTGCATTTCCAATGGAAAGTGGTACTGAGGCAGTCATGTAG	1623	0.4295	MDISDYRRVVFDKIHKFEPEYALKILGYLLLQDNGEQEMAKLASCHDHFIREVAFKAKMVLQGLAAKPVLFPISPPLNNEQGLSHLSAISPTTPTSPPSFQVPSPYWNPHSVSNTNPDTVKKQSQVFSLESCIEPVNTEIGGIGHDYFGLDASAVNFGVEVGRRHSRLSEFPVKTCHYFNKGFCKHGSSCRYYHGLLVSESFPQMYGNDAINEGQMFSPGSLAQLETEIVELLKPRRGSPLSIALLPMAYHEKYNKVLQADGYLTESQRHGKSGFSLTKLLARLKNSIQLIDRPHGQHAVVLAEDAPKYMQKGDFGQSISASRQIYLTFPAESTFTEEDVSNYFNTFGWVEDVRIPCQQRRMFGFVTFVDPETVQTILEKGNPHYVHGSRVLVKPYREKAKVVDRKFPDRIKHPICYSPHYVDIDQEYPLISRSCGNHSSLMTQLMEEDDKALQQKRCLAELHFAKISLSSSPQFSLSMDGSRVSDDGFNFKPAESFSYALNEKPKQTYSNSSDENSSQQLNLPDSPFAFPMESGTEAVM*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g0043	540	MobiDBLite	consensus disorder prediction	505	525	-	-
	Lan11g0043	540	MobiDBLite	consensus disorder prediction	505	540	-	-
	Lan11g0043	540	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	323	398	IPR000504	GO:0003723
	Lan11g0043	540	MobiDBLite	consensus disorder prediction	84	115	-	-
	Lan11g0043	540	SUPERFAMILY	RNA-binding domain, RBD	334	409	IPR035979	GO:0003676
	Lan11g0043	540	ProSiteProfiles	Zinc finger C3H1-type profile.	170	197	IPR000571	GO:0046872
	Lan11g0043	540	CDD	RRM_AtC3H46_like	325	394	IPR034365	-
	Lan11g0043	540	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	334	390	IPR000504	GO:0003723
	Lan11g0043	540	PANTHER	TRANSCRIPTION FACTOR C3H FAMILY-RELATED	1	540	-	-
	Lan11g0043	540	SUPERFAMILY	CCCH zinc finger	173	195	IPR036855	GO:0046872
	Lan11g0043	540	Gene3D	-	167	224	-	-
	Lan11g0043	540	Gene3D	-	326	402	IPR012677	-
	Lan11g0043	540	Pfam	OST-HTH/LOTUS domain	221	299	IPR025605	-
	Lan11g0043	540	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS)	1	540	-	-
	Lan11g0043	540	SMART	rrm1_1	324	394	IPR000504	GO:0003723
	Lan11g0043	540	ProSiteProfiles	OST-type HTH domain profile.	221	305	IPR025605	-
	Lan11g0043	540	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	174	195	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0043	Lan-Chr11	271689	274782	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0043	-		-	gmx:100818984	694.886

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan2g1351	2	24229963	24231734	Lan11g0043	11	271689	274782	LSH
	Lan2g1350	2	24223567	24226904	Lan11g0043	11	271689	274782	PCT
	Lan11g0043	11	271689	274782	Lan2g1350	2	24223567	24226904	PCT