Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0032 ATGGCGGACTCGGACAACGAGTCTGGAGGGCAGAACTTGGGAAATGCGCACGGCGAGTTATCGTTACGAGAACAAGACCGTTTCCTTCCGATTGCTAACGTGAGCAGGATCATGAAGAAGGCTTTACCAGCAAACGCTAAGATCTCTAAGGACGCTAAAGAAACCGTTCAGGAGTGTGTTTCCGAGTTCATAAGCTTCATCACCGGCGAAGCCTCTGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTATGGGCGATGACCACGCTCGGATTCGAAGAGTACGTGGAGCCACTGAAAGTGTATCTCCAGAGGTTCAGGGAGATGGAAGGGGAGAAGACTGTGGCGGCGCGTGATAAGGAAGGTGGTGGAGTTGTGGTTAATAGTGGGTATGACTATGGAGCTGTAAATGCAATGGGGATGATGATGCATCATCAAGGACACGTGTACGGTTCTAGTGGATTCCATCAAGTGGCTGTGAGTGGTAGAGATCGGTAG 513 0.5068 MADSDNESGGQNLGNAHGELSLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKTVAARDKEGGGVVVNSGYDYGAVNAMGMMMHHQGHVYGSSGFHQVAVSGRDR* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0032 170 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan11g0032 170 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
Lan11g0032 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Lan11g0032 170 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan11g0032 170 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lan11g0032 170 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lan11g0032 170 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lan11g0032 170 SUPERFAMILY Histone-fold 25 129 IPR009072 GO:0046982
Lan11g0032 170 Gene3D Histone, subunit A 18 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0032 Lan-Chr11 214722 231868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0032 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.885 3.25e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan11g0032 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0032 K08065 - gmx:100813169 256.144