Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0017 ATGCTCCCTCCGCGTCAGCAATCACGTGTTGGAGGACTTCAAACATCTCTATGTCTGGTTTCTCCGGATCCTCGCCTTTCTCCAGAGGAACCTCGGTCGAACTCTGACAATCTCCATGAATCTCAAACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCTACTGCTGTTGCAATTGCAGCAAAGAAGATGGATAATGGAAAAACTGAGATTGATATCCCTGAGCAGTCGGTTACTCGCCATGTTTCTAATGCAGACAAAATTAGTCTTCAGGACATCGCAAGAGAAAGAGTTGATATAATCTATGAAAAAATGCACCGTCTACCTGAAGAATTTCTAGAAGAGCTGAAAAATGGACTTAGAGTTATCCTTGAGGGAGGGAGCGACTCACAACATAGAGATGAGTTTTTCATTTTGCAGAAGCTTGTTAAGAGTAGATCTGATTTAACAGCCAAGACATTGATTAGAGTGCATCGTGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAAGGATTCTTACATCCTAGCATCAGTCTATCACAGACTTCCCTAATTGAGATATTTGTGTATAAGAGATGCAGAAACATTGCTTGCCAAAACCAGCTTCCGGCTGATGATTGTACCTGTGATACATGCACCAGCAACAATGGTTTCTGCAATCTTTGCATGTGTGTAATCTGCAGCAAGTTTGACTTTCAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCACGGGCCCTTCTGTGAAAAGTGGAGTAGGACCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAACAGGACTTCAGAACTGTTGGGTTGGGTCAAAGATGTCTTCCAACATTGTGCCCCATCATGGGATGGGGAGGCCTTAGTGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCGCGAGGAAGGAAACTATTTTGGAAGTGTGACGATCTCAAGGGAAAACTGAATAGTGGAAAAATGGATGCTAAGGCAGCATGCAGGGCAATATTGATGGTTTTCCAAGAGCTTGAGATGGACTCTCCAAAGGGCCTGGAAAATGCAGAAACTGGAAGGCTGATTGCTCCACAGGAAGCATGCAATAGAATTGCTGAAGTGGTACAAGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAAATGAGAATGTTCAAGAAGGCTCGCTTGACTCTCGAAGCTTGTGACCGGGAATTAGCAGATAAGGCCAGAGAAGCAGCAGAACTGAAGATGGATAGGCAAAAAAAGAAGTCACAGATTGAAGAACTGGAGAGAATTGTTAGGCTTAAAAATGCAGAGGCTGGGATGTTCCAATTGAAGGCTAATGAGGCTAAACAAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCAGATAAATCAGAGGAAGAGTATACTAACAACTATTTGAAACAAAAGTTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAAAAGATCAAATTGCAGGAGAGTTCTCGTGTATCACAGAGCAGTAGTGGTGGTGACCCTTCTTCGATGCTGATGTATTCCAAAATCCATGATCTTCTCTATAATGTTCCTCTAATGGCAGATAGTCAATCCAATGATTGTCACCCTCTCCGATCAAATCCATGA 1704 0.4296 MLPPRQQSRVGGLQTSLCLVSPDPRLSPEEPRSNSDNLHESQTESASSRETWPTAVAIAAKKMDNGKTEIDIPEQSVTRHVSNADKISLQDIARERVDIIYEKMHRLPEEFLEELKNGLRVILEGGSDSQHRDEFFILQKLVKSRSDLTAKTLIRVHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCDTCTSNNGFCNLCMCVICSKFDFQVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSVKSGVGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALVRELDFVSRIFHGSKDPRGRKLFWKCDDLKGKLNSGKMDAKAACRAILMVFQELEMDSPKGLENAETGRLIAPQEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLTLEACDRELADKAREAAELKMDRQKKKSQIEELERIVRLKNAEAGMFQLKANEAKQEAERLQRIALAKSDKSEEEYTNNYLKQKLSEAEAEKQYLYEKIKLQESSRVSQSSSGGDPSSMLMYSKIHDLLYNVPLMADSQSNDCHPLRSNP* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0017 567 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Lan11g0017 567 MobiDBLite consensus disorder prediction 1 52 - -
Lan11g0017 567 MobiDBLite consensus disorder prediction 1 15 - -
Lan11g0017 567 Coils Coil 468 488 - -
Lan11g0017 567 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 555 IPR004082 -
Lan11g0017 567 SMART PHD_3 225 285 IPR001965 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Lan11g0017 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Lan11g0017 567 Coils Coil 419 460 - -
Lan11g0017 567 PIRSF UCP025218 1 556 IPR004082 -
Lan11g0017 567 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Lan11g0017 567 MobiDBLite consensus disorder prediction 38 52 - -
Lan11g0017 567 PANTHER PROTEIN OBERON 2 1 555 - -
Lan11g0017 567 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0017 Lan-Chr11 133002 135836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0017 195 297 PHD Gene Family AT5G57380 31.132 2.54e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0017 - - gmx:100795450 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1391 2 24475739 24478877 Lan11g0017 11 133002 135836 LSH