Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0008 ATGGAATATAGTGCCCTAGTTCACAATTCTGGTGTGTTTGGGAGCTTCTCATCAGACACGGATGAAGCAGCGGATTTGGCAGATGAGTTATTAGCAGAAGGTTGCTGGGTGGAAACAACAGATGGAGACCATATTCAGCAGCAACAAGATATTGAAATTAATGGAGGATCATTTGTGGGTAAGAGATGGTGGATAGGGCCAACATCATCATCATCAACTTCAACATCATCTTCAGTGAAAGAAAGATTAGTGGTTTCTGTTGGATACTTGAAAGAGTACACTAAGAACACCAACGTCCTCATTCAGATATGGGTCCCCCAAAGCACCAGATCATCAGGCTTTGAGTTTAATCATGACTTGGTGGTCACTTCAACAAATCCAAACTCAAATGTTAGATTCTTTAGAAGCCAGGATTACCCGCGGGTTCATCATCAATTGCAACAGTACGATGTACGAGGATGTTTGTCCCTTCCTGTCTTCCAACGTGGCACTGCTACATGCCTTGGTTTCCTTGAGATTACTACTACTAACCATAACTCTTCATCTTTCATCAACTATCATCATCGCCCACAACAACTTATTGACAACAATCTCTCCATTCCTCTCGACCACGGTGCTGCTGATTTTAGGAGTTGTCATCAAAACTTCATTCCACCATCTTCTGTAAAGGTATATGATGAGTTGTACCAAGCAGCACTGGATGAGATTGTAGATGTGTTGACATCAGTGTGCAAGACACACAATTTACCTTTAGCACTCACATGGGCACCTTGCATCCAGCAAGGCAAGTGTGGTTGTGGCCATTCAACCACTGATCAGAATTATGTGTATTGTGTATCAACCGTAGATTCAGCATGTTTTGTTGCAGATCTAGACATGCTTGGATTCCAAGAAGCATGCTCACAATATCACCTATTCAGAGGCCAAGGAATAGTTGGAACAGCCTTCACTACAGCCAAACCTTGTTTTGCTATTGACATCACAGCCTTTAGCAAAGCTGAGTATCCTCTTTGTCACCATGCAAGCATGTTTGGGTTGCATGCTGCTGTTGCCATTCCACTTAGGAGTGTCTACACTGGTTCTGCTGATTTTGTTTTGGAGTTTTTCCTCCCAAAGGATTGCCATGACCCTGAAGAGCAAAGGCACATGTTGAAATCATTGTCCATGCTGGTACAACAAGCTTGTCGGAGCTTGCATGTTGTGACTGAGGATGAATTCACCTTGCCACTACCACCACCACCACCACCACTACTATCATCATCATACAACAAAGAAGAAGAAGCTCATATGATTGAGAAATTATTATTTGCATCTACCCCGTGTTGTTCGTCACAAGTAGAATCATCATCATCATGGATAGCACATATGATGGAGGCACAAGAGAAGGGGAAAGGTGTGTCAGTGTCGTTGGAGTATGAAGTGGAAGAGGCAAAAGAGGAGTTCAAAGTGACAAAGTGGGATGGGAGTAACGAGGTGGTGGTGGAGGGAGAGAGAAGAGAAGTGTTTTCATCAGAATTTAGTGAGTTAAGTTCAGGGTCAAGATCAAGAGCAAGTACGGTAGAGGTTGGTAGTGGAGGTGGAGAAGAATGTTATTCATTTAGTGGAAGGCGTTCATCATCAACAACAACAACAACAACAACTAATTCAGGTTGTGGTTTGAGAAAGACAGGTGAGAAGAGAAGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTCAGACAATACTTTGCTGGAAGCCTCAAAGATGCTGCCAAGAGTATTGGAGTATGTCCTACAACTCTGAAAAGGATATGCAGACAGCACGGGATAACAAGGTGGCCATCAAGGAAAATAAAGAAGGTAGGACACTCTTTAAAGAAACTTCAACTGGTGATTGATTCAGTGCAGGGTGCTGAGGGTGCCATTCAGATAGGCTCTTTCTATACCAGTTTTCCAGAGTTGTGTTCTGCTAGTGCCCGTTCTGATTCATCTAACAAAATGCATGCTTATCATCCCAAGACAGAGTGTGACAATAACAACAACAATGGGTTTTATAATGGAGATGCTTGCAGTCAGAACTTTGCAGCTTCAACTATGATGATGATCAACAACACTAATGATAATAGTAATAATAATAATAATAATAATAGCAATGGAGGAGTTGATGATGTTGTAATGATGACAGAAAGGCATCCTAATGATCATGCATTTCTGAAGAGAGAGTTGTTAATCCAAGAAGATACAAGATCAAAGGCAGCAGGTCTTAGAGTGAAAGCTAGTTTTGTGGATGAAAAAATAAGATTTAGCTTACAAACAAATTGGAGTTTCAGAGAATTGGAGGTTGAGATAGGAAGTCGTTTCAGCATAAATGATATGAGGAATATTGTAGTGAAGTATTTGGATGATGAAGGAGAGTGGGTTGTATTAGCATGTGATGCTGATCTTGAGGAGTGTAAAGACTTGCATAGGTCATCACAAGGACGCACAATTAGGCTCTCACTCTTTCAATCTTCTCCTAATAATACTAATAATAATACTAATGCTATGTTTGGTGGTTGCAGCAGCACCAGCCCTTCATCCAACTAG 2568 0.4163 MEYSALVHNSGVFGSFSSDTDEAADLADELLAEGCWVETTDGDHIQQQQDIEINGGSFVGKRWWIGPTSSSSTSTSSSVKERLVVSVGYLKEYTKNTNVLIQIWVPQSTRSSGFEFNHDLVVTSTNPNSNVRFFRSQDYPRVHHQLQQYDVRGCLSLPVFQRGTATCLGFLEITTTNHNSSSFINYHHRPQQLIDNNLSIPLDHGAADFRSCHQNFIPPSSVKVYDELYQAALDEIVDVLTSVCKTHNLPLALTWAPCIQQGKCGCGHSTTDQNYVYCVSTVDSACFVADLDMLGFQEACSQYHLFRGQGIVGTAFTTAKPCFAIDITAFSKAEYPLCHHASMFGLHAAVAIPLRSVYTGSADFVLEFFLPKDCHDPEEQRHMLKSLSMLVQQACRSLHVVTEDEFTLPLPPPPPPLLSSSYNKEEEAHMIEKLLFASTPCCSSQVESSSSWIAHMMEAQEKGKGVSVSLEYEVEEAKEEFKVTKWDGSNEVVVEGERREVFSSEFSELSSGSRSRASTVEVGSGGGEECYSFSGRRSSSTTTTTTTNSGCGLRKTGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELCSASARSDSSNKMHAYHPKTECDNNNNNGFYNGDACSQNFAASTMMMINNTNDNSNNNNNNNSNGGVDDVVMMTERHPNDHAFLKRELLIQEDTRSKAAGLRVKASFVDEKIRFSLQTNWSFRELEVEIGSRFSINDMRNIVVKYLDDEGEWVVLACDADLEECKDLHRSSQGRTIRLSLFQSSPNNTNNNTNAMFGGCSSTSPSSN* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0008 855 MobiDBLite consensus disorder prediction 533 553 - -
Lan11g0008 855 Gene3D - 746 834 - -
Lan11g0008 855 ProSiteProfiles RWP-RK domain profile. 554 635 IPR003035 -
Lan11g0008 855 ProSiteProfiles PB1 domain profile. 748 831 IPR000270 GO:0005515
Lan11g0008 855 MobiDBLite consensus disorder prediction 830 855 - -
Lan11g0008 855 SUPERFAMILY CAD & PB1 domains 749 833 - -
Lan11g0008 855 PANTHER PROTEIN NLP8 43 836 IPR045012 GO:0003700
Lan11g0008 855 MobiDBLite consensus disorder prediction 533 560 - -
Lan11g0008 855 Pfam PB1 domain 750 830 IPR000270 GO:0005515
Lan11g0008 855 SMART PB1_new 748 831 IPR000270 GO:0005515
Lan11g0008 855 Pfam RWP-RK domain 568 615 IPR003035 -
Lan11g0008 855 PANTHER PROTEIN NLP2 43 836 - -
Lan11g0008 855 CDD PB1_NLP 749 830 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0008 Lan-Chr11 52174 55143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0008 13 832 NLP Transcription Factor Family AT2G17150 39.001 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan11g0008 PB1 4.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0008 - - lja:Lj0g3v0358659.1 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1426 2 24644263 24647378 Lan11g0008 11 52174 55143 LSH