Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0006 ATGGGCAACACATGCCGCGGATCTTTCAAAGGAAAATATACTCAGGCTTTCTCTCACCCTCAAGACAACAACAACAATAATAGTAGTAGTAACACCAACACCAACACCACTCATTCTTCTTCTTCTTCTTCTGATCCTGATAACAACAACAATCTTAACAACAACAACCTTAACCTTCACATCAAACAACCCAACACCATCATGCGCCGTGGCCCCGATAACCAAGCTTATTATGTCTTGGGTCACAAGACTCCCAACATCCGTGATCTATACACTCTTGGCCGTAAACTAGGACAGGGACAATTTGGAACCACTTATTTATGCACTCATAATTCCACCTCCCTTCAATATGCTTGCAAATCCATCTCCAAGAGGAAGTTGATTTCCAAAGAGGATGTCGAAGATGTTCGCAGGGAAATCCAGATTATGCACCATTTGGCAGGTCACAACAACATTGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTTCATATTGTCATGGAGCTCTGTTCCGGTGGTGAATTGTTTGATCGAATCATCCAGAGGGGTCACTACACAGAGAGGAAGGCTGCTCAGTTGACTAAAATCATTGTCGGGGTTGTTGAAGCATGTCATTCCCTTGGTGTTATGCATAGAGATCTCAAGCCTGAAAATTTCTTGTTGGTTAATAAGGATCACGATTTCTCTCTTAAGGCAATTGACTTTGGCCTCTCTGTTTTCTTCAAACCAGGTCAAGTTTTCACTGATGTAGTTGGAAGCCCATACTATGTCGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCTGATGTTTGGACTGCGGGTGTCATACTATACATATTGCTTAGCGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCAGTATTGAAAGGGCATATAGATTTTGACTCAGACCCATGGCCTCTAATATCTGATAGCGGAAAAGATCTGATTAGAAAGATGCTGTGTTCTCGGCCTTCAGAACGGTTGACTGCTCATGAAGTATTATGTCATCCTTGGATATGTGAAAATGGTGTTGCTCCTGACAGAGCACTGGATCCAGCTGTTCTTTCTCGTCTCAAACACTTCTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTGTCCGAAGAGGAGATTGCTGGATTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCCGGTCTGAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACAAGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAATTTATCGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAGGAACATCTCATTGCCGCATTTCACTACTTTGACAAGGACGGGAGTGGTTATATCACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAATATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCTATGATGCAAAAAGGCAATCCTGGAGTTGGAAGGAGGACTATGCGAAACAGTTTGAATTTGAGCATGAGAGATGCACCAAGCCCTCATTAG 1665 0.4258 MGNTCRGSFKGKYTQAFSHPQDNNNNNSSSNTNTNTTHSSSSSSDPDNNNNLNNNNLNLHIKQPNTIMRRGPDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTHNSTSLQYACKSISKRKLISKEDVEDVRREIQIMHHLAGHNNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAQLTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDHDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSRPSERLTAHEVLCHPWICENGVAPDRALDPAVLSRLKHFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIQDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFHYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNPGVGRRTMRNSLNLSMRDAPSPH* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0006 554 SUPERFAMILY EF-hand 373 530 IPR011992 -
Lan11g0006 554 Pfam EF-hand domain pair 467 528 IPR002048 GO:0005509
Lan11g0006 554 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Lan11g0006 554 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 39 539 - -
Lan11g0006 554 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Lan11g0006 554 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0006 554 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Lan11g0006 554 SMART efh_1 396 424 IPR002048 GO:0005509
Lan11g0006 554 SMART efh_1 432 460 IPR002048 GO:0005509
Lan11g0006 554 SMART efh_1 502 530 IPR002048 GO:0005509
Lan11g0006 554 SMART efh_1 468 496 IPR002048 GO:0005509
Lan11g0006 554 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Lan11g0006 554 CDD STKc_CAMK 91 348 - -
Lan11g0006 554 ProSiteProfiles EF-hand calcium-binding domain profile. 503 533 IPR002048 GO:0005509
Lan11g0006 554 CDD EFh 468 528 IPR002048 GO:0005509
Lan11g0006 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 539 - -
Lan11g0006 554 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0006 554 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Lan11g0006 554 Gene3D Transferase(Phosphotransferase) domain 1 177 358 - -
Lan11g0006 554 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Lan11g0006 554 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Lan11g0006 554 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Lan11g0006 554 MobiDBLite consensus disorder prediction 1 61 - -
Lan11g0006 554 CDD EFh 397 456 IPR002048 GO:0005509
Lan11g0006 554 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0006 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Lan11g0006 554 SUPERFAMILY Protein kinase-like (PK-like) 66 374 IPR011009 -
Lan11g0006 554 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Lan11g0006 554 Gene3D - 359 530 - -
Lan11g0006 554 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0006 Lan-Chr11 39268 45139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0006 1 550 EF-hand Containing Proteins AT2G17290 83.485 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan11g0006 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0006 K13412 - gmx:100778173 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1431 2 24684763 24690094 Lan11g0006 11 39268 45139 LSH