LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan10g1104	ATGGCTCCAAAACGAGGTGTTAAAGCTCCCGTTGTAGCTTCCAAGAAGAAACAGGATAATAAGGTGGCGAACCCTTTATTTGAGAAGCGTCCTAAGCAATTTGGGATTGGAGGGGCATTACCTCCTAAGAGGGATTTGACTCGATTTGTTAAATGGCCTAAGACTGTTCAAATTCAAAGGAAGAAAAGAATTCTTAAGCAAAGGTTGAAGGTTCCACCTGCATTGAATCAGTTTACTAAGACACTTGATAAAAACCTTGCAACCAACCTATTCAAGATTCTCCTCAAGTACAGGCCTGAGGATAAAGCTGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAAGCAGAGTCTGATGGAAAACCAGTTGAAGGAAAGAAGCCTATTGTTGTGAAATATGGTCTCAATCATGTAACCTACCTTATTGAGCAGAACAAAGCACAGCTTGTTGTGATTGCTCATGATGTGGACCCAATTGAGCTCGTAGTATGGCTTCCAGCATTGTGCCGGAAGATGGAGATTCCATACTGCATTGTAAAGGGCAAAGCACGCTTGGGAACGGTTGTCCATAAGAAAACTGCATCAGTTTTGTGTTTGACAACTGTCAAGAATGAAGATAAGTTAGAATTCAGTAGAGTCTTAGAGGCTATTAAGGCTAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGGATTATGGGTTCAAAGTCCCAAGCCAAAACCAAGGCCAAGGAAAGGCTCATTGCCAAGGAAGCAGCACAAAGATTGAACTAG	783	0.4189	MAPKRGVKAPVVASKKKQDNKVANPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKILLKYRPEDKAEKKERLLKRAQAESDGKPVEGKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLIAKEAAQRLN*	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan10g1104	260	PRINTS	Ribosomal protein L7A/RS6 family signature	130	144	IPR018492	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A/RS6 family signature	149	162	IPR018492	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A/RS6 family signature	165	175	IPR018492	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A/RS6 family signature	175	189	IPR018492	-
	Lan10g1104	260	SUPERFAMILY	L30e-like	90	231	IPR029064	-
	Lan10g1104	260	ProSitePatterns	Ribosomal protein L7Ae signature.	168	185	IPR004037	GO:0042254\|GO:1990904
	Lan10g1104	260	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lan10g1104	260	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	125	207	IPR004038	-
	Lan10g1104	260	PANTHER	BNAA03G47020D PROTEIN	2	258	-	-
	Lan10g1104	260	Gene3D	-	52	235	IPR029064	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	31	48	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	48	65	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	68	87	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	92	105	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	126	146	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	187	211	IPR001921	-
	Lan10g1104	260	PRINTS	Ribosomal protein L7A family signature	219	239	IPR001921	-
	Lan10g1104	260	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	258	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan10g1104	Lan-Chr10	16247611	16250015	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan10g1104	1	260	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	85.769	3.36e-167	461

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan10g1104	K02936		-	gmx:100797399	483.796