Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g1097 ATGGATTGGGATTGGAAAGAGTTTACTTGGTATCCATCTGGGTTGGAAGTTGATGCTGCTTCAGTGGGTTTGAGGCTTGGTGAGGCTTCTGATTTGATGGAAAACCCGGAATTAGGTACACCTAAGGAATTCAAAGACTTAAAGACTGTGTTATCAACTCCGGGGTCATCGAAGAGATCGCGTTCGAGTAATGGATCGCAGAATTTGTGTTGCTTGGTTGATGGGTGCAACTCTGACCTCAGTGATTGTAGGGAGTATCATAAGCGTCATAGGGTCTGCGAAAAGCACTCGAAAACCCCTGTTGTGTTGGTCGGGGGTAAACAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTCGGGGAGTTTGATGATGTCAAGAGGAGTTGCAGGAAACGTCTAGATGGTCATAATCGGCGCAGGAGGAAACCTCAGCCACCGTCTCTTTTCATGGCTGCTGAGGAATTTCTGTACAATTACAAAGGACCAAGGATCCTGCAATTTGATAGTTCTCAGACATATGCAAACCCTATTATGAGAAATGTGTGGCCTGCCACGGCCAAAACTGGAGCTGAGTCGGGTTATGATCATCACCGACTTTTATATCGAATTGACAAGCATAAGCAGGAGAAGGAAGTTCTTCTCTGGCAAGAAAATGCTCCGAAAGCAAGCATTGGTAATGAAGCAATGCTTGGAACTCCAATCTGCCAACCGACTTCTGGTGCCATTGCCGCATCAGCAAGCGGAAAGGGCAGCCGGAAACTGTCTTCTGATAGCAAACTTGGATCTTTTGACTCAAGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGCTCCAAGTTGAGTTTGGTGCAGTCTGGCACCACCTGTCCAATACAATCTCCAACAGGATCTGTGAATTTCGATGCCGTGGATGAGTACTCGTGCTCGGGAAGAAAAATAGATAAGCCGAATGGCGCGGTATTCGTTCTTGACTCAAATGCAACCAACCTTCATTGTAATGGAATGCTGCAAATGGGACCTGATGGATTGGTGAAAAATGGGGACTCACTGACTCTTCCCTCTTTCTGGGAGTAA 1086 0.465 MDWDWKEFTWYPSGLEVDAASVGLRLGEASDLMENPELGTPKEFKDLKTVLSTPGSSKRSRSSNGSQNLCCLVDGCNSDLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKPQPPSLFMAAEEFLYNYKGPRILQFDSSQTYANPIMRNVWPATAKTGAESGYDHHRLLYRIDKHKQEKEVLLWQENAPKASIGNEAMLGTPICQPTSGAIAASASGKGSRKLSSDSKLGSFDSSCALYLLSTLQTQSSKLSLVQSGTTCPIQSPTGSVNFDAVDEYSCSGRKIDKPNGAVFVLDSNATNLHCNGMLQMGPDGLVKNGDSLTLPSFWE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g1097 361 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Lan10g1097 361 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 361 IPR044817 GO:0003677
Lan10g1097 361 Pfam SBP domain 71 144 IPR004333 GO:0003677
Lan10g1097 361 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Lan10g1097 361 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Lan10g1097 361 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 15 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g1097 Lan-Chr10 16156693 16159035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g1097 71 169 SBP-box Gene Family AT5G50670 67.677 4.02e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan10g1097 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g1097 - - lja:Lj1g3v3847150.1 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g1097 10 16156693 16159035 Lan3g1639 3 28400952 28403502 LSH