Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g1055 ATGGTGAATGAAGAACAAAAACGTTGCAGCCCCAAAACCCAAAAGAACCCATTAACAGAATCAAATGTTCAAAACAGTAACACCCTTTTCAGCCCAAGATTCAAAAATGCTGCTGCTCTTGCTGGTTGGGATGAAGAAGCATTGTTATTGGCTAGTCTTGTTGTTGAAGATACACCAGATCGTGATTCAAGAACCAAGAAACGATTCGTTTTGAATTCTAAATCTCCTCATACCAATTCAAGAAGGAAACGTAGAGTTCAGAGGAGTCCACATTCAATCCCTGTAGCTGTTCTTAATCTTGATGAAGAAGATACTCCCAAAAAAGAAAGTGGAAAAAAGAAGAAAGAAAAGAAAACAACTACTAATGAAGGAAGTAAAATAGAAGGGAGTGAATTGAAGGAAAATGTCTCTAATGTTTCTTCTTCCAACTCTGCTCTTCCATGCATTGATAAACTAAGAGATGAACTTTCTTGTGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACTACTCCATGTGGTCACAGCTTTTGTAGAAAATGTCTTCGATCCGCGGCAGACAAGTGTGGTAAAAAATGCCCAAAATGCAGGCAACTAATAAGCAACGGACGATCTTGCACTGTGAACACCGTTCTGTGGAATACAATACAGCTCCTATTTCCACAGGAAGTTGAAGCAAGAAAAGCAGCCAGTGCTTCAAAAGTTAGACATACATCAACTACATCCAATATCCCAGAAGCAGCATTTTATAGTAACCTGAGGAATCAAAGCACGGAACGAGCATCGGGGGCATCGAGCAGAGGTATGAGTACAAGGAGAAACAACGTGATAATCGAGGATGAAGATGCTGCTGCATCGGTTAGAAGGTTTCGTAGAGAAATCGATGGACAAAGCCGAGGATCTCGGGTGGTTCACGTTCACAATAACTCAAGGAATGGAACATCTTCATCGGTAAGAACACGGACAAGAAGAGGGATTACTACTAGTCAAGATGAGGATGCTGCATTAGCTCAAAGGTTACAAAGAGAAGAGTTTATGCAGGCTTTCAGGGGAACAAGCCAGGAACAACAAACTAGTGGAGCCTCATCCTTATCTTTAGCACGAGCGAATGTGAGGGCAATGGTGCTTCGAATGAGAGATCGAAGGACATGA 1152 0.4149 MVNEEQKRCSPKTQKNPLTESNVQNSNTLFSPRFKNAAALAGWDEEALLLASLVVEDTPDRDSRTKKRFVLNSKSPHTNSRRKRRVQRSPHSIPVAVLNLDEEDTPKKESGKKKKEKKTTTNEGSKIEGSELKENVSNVSSSNSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKAASASKVRHTSTTSNIPEAAFYSNLRNQSTERASGASSRGMSTRRNNVIIEDEDAAASVRRFRREIDGQSRGSRVVHVHNNSRNGTSSSVRTRTRRGITTSQDEDAALAQRLQREEFMQAFRGTSQEQQTSGASSLSLARANVRAMVLRMRDRRT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g1055 383 MobiDBLite consensus disorder prediction 296 331 - -
Lan10g1055 383 Pfam Zinc finger, C3HC4 type (RING finger) 158 196 IPR018957 GO:0046872
Lan10g1055 383 MobiDBLite consensus disorder prediction 101 130 - -
Lan10g1055 383 MobiDBLite consensus disorder prediction 302 331 - -
Lan10g1055 383 MobiDBLite consensus disorder prediction 58 135 - -
Lan10g1055 383 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Lan10g1055 383 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Lan10g1055 383 SMART ring_2 158 196 IPR001841 -
Lan10g1055 383 SUPERFAMILY RING/U-box 150 221 - -
Lan10g1055 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 227 IPR013083 -
Lan10g1055 383 PANTHER UNCHARACTERIZED 20 275 - -
Lan10g1055 383 PANTHER UNCHARACTERIZED 297 375 - -
Lan10g1055 383 MobiDBLite consensus disorder prediction 246 269 - -
Lan10g1055 383 PANTHER - 297 375 - -
Lan10g1055 383 PANTHER - 20 275 - -
Lan10g1055 383 MobiDBLite consensus disorder prediction 12 29 - -
Lan10g1055 383 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g1055 43 271 C2H2 Transcription Factor Family AT5G39550 28.448 8.37e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g1055 - - gmx:102666585 398.282