Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g1008 ATGAGTACTATACTTGATAGTAGCTCAAATTCAATTTCATTTTCATCTAATTCTAATTCGACATCGTTGATATCGTTAAAGAAAGATGAGGAAGGATTAAAGAAGGCGAAGCGAAATCGAGATTCAAATAAGCATCCGACGTATAGAGGGGTTCGGATGCGAAATTGGGGGAAATGGGTGTCTGAAATCCGCGAGCCGCGTAAAAAATCGCGCATTTGGCTCGGTACATTTCCAACGCCCGAAATGGCAGCAAGAGCTCATGACGTGGCAGCTCTTAGTATAAAAGGAGACACCACCATTCTTAACTTCCCCGAGCTCGCAAGCTCACTTCCTCGGCCAGTGTCATTGGCCCGTCGCGATGTTCAGGCCGCTGCAGCAAAGGCTGCCCAAATGGAAAAGTTCGATAATTTCTCATCATTATCATCACCACCATCATCATCATCACTAGTTTCTTCGGTAAAAACATCATCAACATTGTCTTTGTTGGTTTCTTCTGCTGGGTCTGATGAAGAACTTAGTGAGATCATAGAGTTGCCAAGGTTAGGAACAACCAATGATTGTTTTGGAGAAGAGTTTGTGTTCGTTGAATCCGAGGATGTATGGATGTGTCAGGCACCAATACCATGGTTTCAGAGCATAGAATATGATGAGTTTGCATTTTCAGAGGTTTGTAACTAG 678 0.4322 MSTILDSSSNSISFSSNSNSTSLISLKKDEEGLKKAKRNRDSNKHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGDTTILNFPELASSLPRPVSLARRDVQAAAAKAAQMEKFDNFSSLSSPPSSSSLVSSVKTSSTLSLLVSSAGSDEELSEIIELPRLGTTNDCFGEEFVFVESEDVWMCQAPIPWFQSIEYDEFAFSEVCN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g1008 225 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 MobiDBLite consensus disorder prediction 1 21 - -
Lan10g1008 225 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lan10g1008 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 217 - -
Lan10g1008 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 217 - -
Lan10g1008 225 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Lan10g1008 225 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g1008 Lan-Chr10 15323389 15324367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g1008 17 214 AP2-EREBP Transcription Factor Family AT5G11590 62.871 2.70e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan10g1008 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g1008 K09286 - gmx:100305349 218.009