Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g1003 ATGGACAGTGACCGGAAAATCCCCGTCCCATCTGATCAGCCCATAGACGGTGTTCAGAAAACTAGAGCATTACATGGGAGGACTTCTGGCCCTACAAGGCGCTCTACAATAGGGCATTGGACACCTGAGGAGGATGATATCTTGAGAAAGGCTGTTCAACAATTGAAAGGAAAGAATTGGAAAAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTACATAGGTGGCAGAAAGTTCTAAATCCCGAGCTTATCAAAGGTCCATGGTCTAAAGAGGAAGATGAAGTAATTATTGAATTGGTGAACAAATATGGCCCTAAAAAATGGTCTACTATTGCACAACATTTACCTGGACGTATTGGTAAGCAATGTAGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTAATACACGCTCATCAGATTTATGGGAACAAATGGGCGGAATTAACGAAGTTCTTGCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGCACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTCGCGTCAGGCTTGCTTAATCAATTCCAATCTGTACTTCATGTGGGAAATTCAAATCAATCAATGGTTTTAGCCTCTTCGAGCTTGCAGTGTGGAGATGATAATGGTTCGAAGCAGACAGAAGGAGAGGAAGTTCCAGAATGTAGTGAGTCAGCTAATGCTGGTCATTTTCCATTGGCAATAGAGATGAGCGATGCTGGCTTACAAACTAGAGAGGATTATAGACGAAATGAAGATTGTAGTCATGGAAAGGATCATGGTTCGTGTCAAGCATGCTGTTCAGACAATGTTCGCCAAGATACTCACACTTCTCAATTTATTGATCGGAAATTCTCACTTGAAGTCGGAAATCCCATCAGTGAGGATTGTCAAATTAATTTTCATTCCTTCACCAATATCTCATCAGAGGGCTTGATGCAGGAATCCTCCCAATTGCAAAGAGATTGCAATGCTCCTCATGAAATCTGTGACTATAATCCATTTCAAACTTCAGTGAGTTTAGGTGTTTCCACATCCACGGGACATACTTCTACAGATTCTGTCAGACCAGAGCTGATATCTGATGATACATGTGGCAGAGTCTTTTTCTCAGAGGCAGCGAATGATGCATGTTTTTGCTCCGGAGATAATAAAGGTGTAGATTTTGTCAACTTTTCTGGATATACTTCATTTCTTTGCCAGTCATGTGATATCCGTATGCCTGAAACCAGTGGAACCTCAACTTCACAGCAAAGTTGTCCTCCGTGTTTTTGTACTTTTAATACTTCATCCTCCCAATCAGTTCCACCAGTACTTTCTGCTAGTGGTCACTGTCTGGTCTATACTGCCCGTGCCGATCAATTATTTGGGCCTGAGGATCAGCAGATTGTTTCTGGGGCACCTGATAATTTCGTTTATGCCAATGACATGTCAAGTTCTCCTCGTGTTTATGATATAGATAAGGAAGTAATGCAAGAGTCACCAGATATTGTGAAGGATACTTCAAAGTTGGTCCCTGTAAAGAGTTTCGGATTTGCATCAGATTCTATGCAAACTTGTTATCCAACAGATGAAAATCCAACCGCACGTATAAAAAAGGAGGATGCAGGAGCTCTATGTTATGAGCCTCCTCGGTTTCCTAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGGCTGATATGCAGCAAGAATTTAGTCCCTTTGGTATCCGCCAGTTTATGATGTCATCAATGAACTGTCTAACACCTTTCAGGTTGTGGAACTCACCCTCTCGTGATGATAGCCCAGATGCATTGTTGAAAAGTGCAGCCAAAACTTTCACAGGCACACCGTCCATATTAAAGAAACGTCGCCGTAGTCTGTTATCACCACTATCAAATAAAAGAATTAGCAAGAAGCTTGAGACTGACATGACAGCCACGTTGACCAAAACTTTTCCCAGCTTTGAAGGCATCTTTAACGGCAATGAGACTTCAGAAGCAGTTTTGCTTTCTCCAACTGCATTGCAGAATAGGAACTCTAGTGTGTCAGTTGATGATGGTAAAGAAAATTATGGACCAGCCTTTAAAGGGGAACGAGTGGAGGAGAAAATGAAATCTGCAATTTTGGACAAAATGAAGTCAGAAAATGATACCGTTGGCTGTAATTCTCAGAATGAAATTAAGAAGCGACCTCTTGACATTGATGCTAAAATGAAGATCGTCGTTGGTGCTGCCACTGTTGCTGAGATTGTGCACCAACCTTCTGGAGTTCTGGTTGAACATGATATAAATGACAGGTTATTGTATTCTCCTGATCAAGCTGGTTTTAAGTCAGACATTGTTCTGGATTCAAGTGCTAGAACTCCCAAGAAATTGGACAATAACAGTTCGGAAAAAGCTCCGAATCAGAGCATCCCTTTGAAATTATCTTCTGAAAATCCATGCTCAAATGTTGACTCTCCTTGTGTTCGTGCAAAGGAGCATGACAGACTTTCAGTTGCTGTTACTTGTGTACAATCTGTCTGTTCATCAGCCCCAGGGGAGAATTCAGGGGATCAAACCAGAAATGATGGCCCTTTTGAAACTAGTAACATATTTGGTTCAACACCTTTCCGGAAAAGCCTTGAATCACCTTCTGCGTGGAAATCTCCATGGCTCTTCAACACTTTTCTGTCCAGTCCCAGATTTGCTACCGAAATTACAATTGAGGATTTTGGGTATTTCATTAGCCCGGGTGATAGAAGCTATGATGCAATCGGGTTGATGAAACAAGTCAGCGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGATTTTGGGAAATGAAACTCCTAAGGCGTTGAAGAAGGATGCAACTGGAAACAAGGATGGGAACCATGAAAATAATGATCCGCGCAAACAGGCTGGAAACAATTCTCAATTGGCTATAAATTCTTTGATGGAGCGGCGAGTACTTGACTTCAGCGAATGTGGAACGCCGGGCAAGGGTGATAACAGCAAATCCTCCTCAGCTTTGAGCTTCTCAGGTCCTACTTCATACTTGCTGAAAGGTTGTAGATAG 3114 0.4197 MDSDRKIPVPSDQPIDGVQKTRALHGRTSGPTRRSTIGHWTPEEDDILRKAVQQLKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWSKEEDEVIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIHAHQIYGNKWAELTKFLPGRTDNAIKNHWHSSVKKKLDSYFASGLLNQFQSVLHVGNSNQSMVLASSSLQCGDDNGSKQTEGEEVPECSESANAGHFPLAIEMSDAGLQTREDYRRNEDCSHGKDHGSCQACCSDNVRQDTHTSQFIDRKFSLEVGNPISEDCQINFHSFTNISSEGLMQESSQLQRDCNAPHEICDYNPFQTSVSLGVSTSTGHTSTDSVRPELISDDTCGRVFFSEAANDACFCSGDNKGVDFVNFSGYTSFLCQSCDIRMPETSGTSTSQQSCPPCFCTFNTSSSQSVPPVLSASGHCLVYTARADQLFGPEDQQIVSGAPDNFVYANDMSSSPRVYDIDKEVMQESPDIVKDTSKLVPVKSFGFASDSMQTCYPTDENPTARIKKEDAGALCYEPPRFPSLDIPFFSCDLVQSGADMQQEFSPFGIRQFMMSSMNCLTPFRLWNSPSRDDSPDALLKSAAKTFTGTPSILKKRRRSLLSPLSNKRISKKLETDMTATLTKTFPSFEGIFNGNETSEAVLLSPTALQNRNSSVSVDDGKENYGPAFKGERVEEKMKSAILDKMKSENDTVGCNSQNEIKKRPLDIDAKMKIVVGAATVAEIVHQPSGVLVEHDINDRLLYSPDQAGFKSDIVLDSSARTPKKLDNNSSEKAPNQSIPLKLSSENPCSNVDSPCVRAKEHDRLSVAVTCVQSVCSSAPGENSGDQTRNDGPFETSNIFGSTPFRKSLESPSAWKSPWLFNTFLSSPRFATEITIEDFGYFISPGDRSYDAIGLMKQVSEQTAATYANAQEILGNETPKALKKDATGNKDGNHENNDPRKQAGNNSQLAINSLMERRVLDFSECGTPGKGDNSKSSSALSFSGPTSYLLKGCR* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g1003 1037 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 804 833 - -
Lan10g1003 1037 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Lan10g1003 1037 SMART sant 36 85 IPR001005 -
Lan10g1003 1037 SMART sant 88 137 IPR001005 -
Lan10g1003 1037 SMART sant 140 188 IPR001005 -
Lan10g1003 1037 Gene3D - 142 203 - -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 860 882 - -
Lan10g1003 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Lan10g1003 1037 Gene3D - 89 140 - -
Lan10g1003 1037 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Lan10g1003 1037 CDD SANT 143 183 IPR001005 -
Lan10g1003 1037 Gene3D - 37 88 - -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 966 981 - -
Lan10g1003 1037 PANTHER MYB PROTEIN-RELATED 5 1036 - -
Lan10g1003 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Lan10g1003 1037 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Lan10g1003 1037 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 1036 - -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 959 988 - -
Lan10g1003 1037 CDD SANT 40 83 IPR001005 -
Lan10g1003 1037 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Lan10g1003 1037 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Lan10g1003 1037 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 1006 1029 - -
Lan10g1003 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 83 IPR017930 -
Lan10g1003 1037 ProSiteProfiles Myb-like domain profile. 38 83 IPR001005 -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 805 833 - -
Lan10g1003 1037 CDD SANT 91 135 IPR001005 -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 1 39 - -
Lan10g1003 1037 MobiDBLite consensus disorder prediction 1012 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g1003 Lan-Chr10 15275554 15283487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g1003 5 1037 MYB Transcription Factor Family AT4G32730 40.625 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g1003 Myb_DNA-binding 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g1003 - K09420 aprc:113848458 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g1003 10 15275554 15283487 Lan6g1735 6 28591145 28598390 LSH
Lan10g1003 10 15275554 15283487 Lan14g0750 14 14472927 14480371 PCT
Lan10g1003 10 15275554 15283487 Lan3g1503 3 26548931 26555869 PCT
Lan14g0750 14 14472927 14480371 Lan10g1003 10 15275554 15283487 PCT
Lan3g1503 3 26548931 26555869 Lan10g1003 10 15275554 15283487 PCT