Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0977 ATGGAGCGGCCAGGGCTGGGGAGCGTGAACGGCATTCAGCATGTTATTGAGATAGCCGGACATACTGATGCTTCTGCTACTGCCTCACATGATAGACATATCGATGGCATTGATATACCACTGCAAGAAGACAGACATAGTGGTGCAAGGTTAACTGTTTCTCAGTCGTCAGTTTTAACATCTAGTGTATCTAGTGGGTCAAATACTAGGAATTCTTTGTCTGGAAGTCGAGGGGATACGCGTCAGCGTAGGAGTCCAGTGCATTCTGTATTATGGTTATCTGTGGAGTTAGTCCTCTTAGTAAGCCAGATTATTGCGTCTATTGTTGTTTTGTCTTTGTCGAGGCATGAACATCCACATACCCCATTATTTCAATGGATTGTGGGTTATGCAGTTGGATGTGCTGCTACTCTCCCTCTACTTTGTTGGCGGTATTATCACCATAACCATATTCGGGACCAAGATTCATCTCAATCACGTCAAACATCTCCTCAGATTAATGATGATTCAGGGACATTTGTTTCCAGCTCCAGAACTAATGAAGGAGAAGATAGTCAGCATGCTGTTGTATCATCCAGAAGCAATCAAGCTTCAGTGTTGATGAATAGAAGAATGAAGACACTGATGGAATACTTTAAAATATCCCTAGATTGCTTTTTTGCCATATGGTTTGTTGTTGGAAATGTATGGATGTTTGGGGGACATTCGTCTGCTGCTGATGCTCCTAATATATACAGGTTATGTATAGTGTTTCTTGTCTTTAGTTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATTTGTTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGGGAGGTTCCGACACAAAACACAGGAGCAACTTCCGAATCCATTAATGCTCTGCCAACTTTCAAGTTCAAGACAAAGAAAAATAAAAGAATTGGTGAAAGCAACGCGGCTGTGGCTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGTGTGATCACTGGAGAAGATGCTGTTTGCTGCATCTGCCTTGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAATGCGTTATGCCCTCTTTGCAAGAGTGAGGTTGGCGAGAAGTTCCGAAGAGTGGAGAATGGCGTTGTTCACACCATAGTTTAA 1212 0.4249 MERPGLGSVNGIQHVIEIAGHTDASATASHDRHIDGIDIPLQEDRHSGARLTVSQSSVLTSSVSSGSNTRNSLSGSRGDTRQRRSPVHSVLWLSVELVLLVSQIIASIVVLSLSRHEHPHTPLFQWIVGYAVGCAATLPLLCWRYYHHNHIRDQDSSQSRQTSPQINDDSGTFVSSSRTNEGEDSQHAVVSSRSNQASVLMNRRMKTLMEYFKISLDCFFAIWFVVGNVWMFGGHSSAADAPNIYRLCIVFLVFSCIGYAMPFILCSTICCCLPCIISILGVREVPTQNTGATSESINALPTFKFKTKKNKRIGESNAAVAEGGVVAAGTEKERVITGEDAVCCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGEKFRRVENGVVHTIV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0977 403 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 393 - -
Lan10g0977 403 MobiDBLite consensus disorder prediction 57 80 - -
Lan10g0977 403 Pfam Ring finger domain 343 384 IPR001841 -
Lan10g0977 403 MobiDBLite consensus disorder prediction 57 82 - -
Lan10g0977 403 SUPERFAMILY RING/U-box 334 394 - -
Lan10g0977 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 399 IPR013083 -
Lan10g0977 403 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Lan10g0977 403 MobiDBLite consensus disorder prediction 154 190 - -
Lan10g0977 403 SMART ring_2 343 383 IPR001841 -
Lan10g0977 403 CDD RING-H2_RNF111_like 342 384 - -
Lan10g0977 403 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 393 - -
Lan10g0977 403 MobiDBLite consensus disorder prediction 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0977 Lan-Chr10 14809612 14813972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0977 42 389 C3H Transcription Factor Family AT1G80400 51.977 3.08e-135 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0977 - - gmx:100785559 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0977 10 14809612 14813972 Lan6g1762 6 28851737 28862352 LSH