Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0974 ATGTCTAACACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATATATGATTACCTACTGAAGAGGGATTTGAAGGCTGCAGCTCAGGCTTTTCAAGCTGAAGCGAAAGTATCCTCGGACCCGGTTGCGATAGATGCACCAGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGAGTAACAAGAAGCACTCTGACGTTGCTGCATCTTATGCTGAGACACAGTTAATTAAGGCTCGGGAGCAGCAGCAACAACAACAACGACCGCAGCCACAACCCCAGCAGTCACAGCAGCAACAACAACAAAACATGCAGACGCAACAGCTCCTGTTACAGAGGCATGCTCAGCAGCAGCAGCAACAGCAACATCAACAGCAGTTACAGACACAGCAACAGCAACCACCACCACAACAGCAGAGTAGGGATAGGCCTTATCTCTTAAACGGTGCTATGAATGGGTTAGATGGAAACCCGAGCGCTGCAAATGCACTAGCGACAAAGATGTACGAGGAGAGGTTAAATCTGCCTCTTCAGAGGGATTCTTCGGATGATGCAACAATGAAGCAAAGATTTGGAGACCAACTCATGGACCCAAATCATTCCTCAATATCTGGAGCTACTGGCCAGCCTTCAGGCCAAGTTTTGCACGGTGTTGCTGGCGCGATGCCTCCACAAGTTCAAACTACTGGTCAGCAATTACCAGGTTCTACTCTGGATATAAAGAGTGAGATTAATCCCGTTTTAAATTCGAGAGCTGTGGGTCCTGAAGGGTCATCGATAACAATTCCTGGGTCTAATCAAGGTAACAACAACAATTTGACTCTGAAAGGGAGGCCAATCACAGGGTTGGAGCAACGACGCTCTGGTATAATCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAATCTTTTCATCAGCTTCCAATGTTGAGTCCACAGCATCAGCAACAACTTATGCTAGCGCAACAAAATATGGCGTCATCATCTCCCGGTGATGATAGTAGAAGACTCAGAATGCTACTGAATAATAGGAATATGGGCCAAGGTAGGGATGGTCTTTCAAATCCGGTTGGTGATGTAGTATCAAATGTTGGATCACCACTTTCCGGGGGTGGCCCTCCTTTTTGTCGTGGTGATACAGATATGCTAATGAAGTTGAAATTGGCTCAGTTACAACAACATCAACAGCAGCAGAATGCTAATTCACAGCAGCACCAACAACAACAGCACGGTCTTTCGAATCCGCAATCACAAACTTCAAATCATAACATGCTCCAAGATAAAGTAGGTGGAGGTGGTGGCAGTGTTACTGTTGATGGCAGCTTGTCAAATACGTTTAGAGTAAATGATCAGGTTTCTAAAACCCATACCGGGAGAAAGAGAAAGCAGGCTGTTTCTTCTTCTGGTCCCGCCAACAGCTCCGGAACAGCAAATACAGCCGGTCCATCTCCAGGTTCACCACCCTCAACTCCCTCAATTCATACGCCTGGTGATGTGATGTCAGTGCCTGCTTTAAATCATAATAGTGTAACTACTTCGAAGCCTATAATGATGTTTGGCACCGATGGCACCGGAACTCTTACGTCACCTTCAAATCAGTTGTGGGATGATAAGGATCCTGATTTGCAGGCTGATATGGATCGTTTTATGGATGATGGATGTCTTGATGAAAATGTCGAGTCTTTTTTATCCCATGACGATACAGGCCTTAGAGATACAGTTGGGCGTGGTATGGATGTGAGCAAAGGCTTCACATTTTCTGAACTAAATTCTGTACTTGCAAGCACAAGCAAAGTCGGTTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGCGGTGGCCACGACAAAAAGGTTGTTTTATGGCACACAGATTCTCTAAAGCAGAAAACTATTCTTGAAGAGCATTCATCCTTAATCACTGATGTCCGTTTCGGTCCAAGCATGCCTCGTCTTGCAACATCGTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGCACCTTTAGCGGTCATTCTGCATCTGTTATGTCGTTAGATTTTCATCCTAATAAAGATGACCTTATCTGCTCATGCGATGGTGATGGCGAGATTCGGTATTGGAGCATTAACAACGGCAGTTGTACTAGAGTCACGAAGGGTGGCACTGCACAGGTGAGATTCCAGCCTCGTCTAGGGAGGTGCCTTGCTGCCGCTGCAGAGAACATTGTCTCTATACTCGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGACATACAAAGCCAATACATTCTTTGTGTTGGGATCCTTCCGGGGAGTTCCTGGCATCTGTTAGCGAGGACTCTGTCAGAGTTTGGACTTTCGGATCAGGTAGCGCCGGGGAGTGTGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTTACTCGTGTGTTTTCCATCCGACGTATTCTTCGTTGCTCGTAATTGGTTGTTACCAGTCAATGGAGCTGTGGAATATGAGTGAAAACAAGACAATGACATTGTCTGGTCATGATGGTCTTATTGCTTCATTGGCAGTTTCAACAGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGATTGTTAAGCTCTGGAAGTAG 2652 0.4559 MSNTNWEADKMLDVYIYDYLLKRDLKAAAQAFQAEAKVSSDPVAIDAPGGFLFEWWSVFWDIFIARSNKKHSDVAASYAETQLIKAREQQQQQQRPQPQPQQSQQQQQQNMQTQQLLLQRHAQQQQQQQHQQQLQTQQQQPPPQQQSRDRPYLLNGAMNGLDGNPSAANALATKMYEERLNLPLQRDSSDDATMKQRFGDQLMDPNHSSISGATGQPSGQVLHGVAGAMPPQVQTTGQQLPGSTLDIKSEINPVLNSRAVGPEGSSITIPGSNQGNNNNLTLKGRPITGLEQRRSGIIQQQKPFMQAPQSFHQLPMLSPQHQQQLMLAQQNMASSSPGDDSRRLRMLLNNRNMGQGRDGLSNPVGDVVSNVGSPLSGGGPPFCRGDTDMLMKLKLAQLQQHQQQQNANSQQHQQQQHGLSNPQSQTSNHNMLQDKVGGGGGSVTVDGSLSNTFRVNDQVSKTHTGRKRKQAVSSSGPANSSGTANTAGPSPGSPPSTPSIHTPGDVMSVPALNHNSVTTSKPIMMFGTDGTGTLTSPSNQLWDDKDPDLQADMDRFMDDGCLDENVESFLSHDDTGLRDTVGRGMDVSKGFTFSELNSVLASTSKVGCCHFSSDGKLLASGGHDKKVVLWHTDSLKQKTILEEHSSLITDVRFGPSMPRLATSSFDKTVRVWDVDNPGYSLRTFSGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVTKGGTAQVRFQPRLGRCLAAAAENIVSILDVETQACRYSLKGHTKPIHSLCWDPSGEFLASVSEDSVRVWTFGSGSAGECVHELSCNGNKFYSCVFHPTYSSLLVIGCYQSMELWNMSENKTMTLSGHDGLIASLAVSTVNGLVASASHDKIVKLWK* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0974 883 PRINTS G protein beta WD-40 repeat signature 618 632 IPR020472 -
Lan10g0974 883 PRINTS G protein beta WD-40 repeat signature 660 674 IPR020472 -
Lan10g0974 883 PRINTS G protein beta WD-40 repeat signature 870 883 IPR020472 -
Lan10g0974 883 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 883 IPR044716 GO:0003714
Lan10g0974 883 MobiDBLite consensus disorder prediction 444 459 - -
Lan10g0974 883 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 883 - -
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Lan10g0974 883 MobiDBLite consensus disorder prediction 397 509 - -
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 796 IPR001680 GO:0005515
Lan10g0974 883 MobiDBLite consensus disorder prediction 86 166 - -
Lan10g0974 883 Pfam LisH 10 36 IPR006594 GO:0005515
Lan10g0974 883 SUPERFAMILY WD40 repeat-like 595 883 IPR036322 GO:0005515
Lan10g0974 883 MobiDBLite consensus disorder prediction 86 152 - -
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 883 IPR001680 GO:0005515
Lan10g0974 883 Coils Coil 395 415 - -
Lan10g0974 883 Pfam WD domain, G-beta repeat 846 883 IPR001680 GO:0005515
Lan10g0974 883 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Lan10g0974 883 Pfam WD domain, G-beta repeat 604 630 IPR001680 GO:0005515
Lan10g0974 883 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Lan10g0974 883 Pfam WD domain, G-beta repeat 639 673 IPR001680 GO:0005515
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 676 - -
Lan10g0974 883 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Lan10g0974 883 MobiDBLite consensus disorder prediction 469 490 - -
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 803 842 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 677 717 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 844 883 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 634 673 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 759 797 IPR001680 GO:0005515
Lan10g0974 883 SMART WD40_4 592 631 IPR001680 GO:0005515
Lan10g0974 883 SMART Lish 8 40 IPR006594 GO:0005515
Lan10g0974 883 CDD WD40 603 883 - -
Lan10g0974 883 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 722 - -
Lan10g0974 883 MobiDBLite consensus disorder prediction 397 433 - -
Lan10g0974 883 Coils Coil 120 140 - -
Lan10g0974 883 Gene3D - 730 883 IPR015943 GO:0005515
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 676 IPR001680 GO:0005515
Lan10g0974 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
Lan10g0974 883 Gene3D - 575 729 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0974 Lan-Chr10 14761911 14772712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0974 644 882 Miscellaneous Gene Families AT5G08390 24.490 8.06e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan10g0974 WD40 0.002 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0974 - - aip:107605121 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0974 10 14761911 14772712 Lan3g1050 3 22811692 22821101 LSH
Lan10g0974 10 14761911 14772712 Lan15g1013 15 19284316 19294085 PCT
Lan10g0974 10 14761911 14772712 Lan14g0795 14 14822237 14831153 PCT
Lan10g0974 10 14761911 14772712 Lan3g1050 3 22811692 22821101 PCT
Lan15g1013 15 19284316 19294085 Lan10g0974 10 14761911 14772712 PCT
Lan14g0795 14 14822237 14831153 Lan10g0974 10 14761911 14772712 PCT
Lan3g1050 3 22811692 22821101 Lan10g0974 10 14761911 14772712 PCT