Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0968 ATGGATGACTCATACAATTGGCTCTCTTTCATTCCTCTTTCTCCTATAAATTCTTCCTTACCACCTTATCTGCAAGAATCTCAATCTCATAACCCATTCTCTCTTGAGACCTCAATGGATGAAAACATGGATAGTCCTTTCCAAAATCATGATTGGAATCTAATCAATTCTCATAGCAGCAATGAAATTCTAGAGCCTGAAGATTTTTTAGGTGTGAGAAGCTCTGAAAATCAGTCTGATATTTTAGCCTTAAATGAGATTCAGTCAAATGATTCAGATTACCTCTTCACAAACAACAATTTCTCGGTCACGCCAATTCAAAACTCACTTGTTGCTGCAACTAACCTTGGCAACTATGAATATCAAGAAAATAATATGCAGCCATTGACATTATCCACTGGAAATGTTGGTAATAATGATTCAACAAACCAAAGAAGTGGTGATAATAATACAAACAATGCTGTTCAAGTTGCACGCAGAAATTCTTTGCAATACTCTAGGCAGAGAAAATCAATATACCGTGGTGTATCAAGGCATATATCTACTGGAAAATATGAAGCTCACATTTGGGATAGTAGCATTAAAAGGGAAGGAAAATCAAAAAGCGGTTTCCAAGTTTATTTGGGTGGGTATGACACAGAAGAGAAAGCAGCTAGGGCCCATGATTTAGCTGCCCTAAAGTATTGGGGTGAATCTACCATTACCAACTTTCCTATTGGTAACTATGAGAAGGAGTTGGAAGAAATGAAGAACATGACTAAAAAAGATTTTGTGGCTGCAATTAGAAGGAAGAGTACTGGATTTCGTAGGGGTGCATCACCGTATCGTGGAGTCACAAAGCACAGCAAAAATGGAAAATGGCAAGCAAAGATAGGCAGAGTTGATGGACATAAAGATCTTTATCTAGGAACATATAGTACTGAAGAAGAAGCAGCAGAAGCTTATGATATTGCTGCCATAAAGTTTAGAGGCCCTAATGCTGTGACCAACTTTGATATCAATCGTTATGATGTGAAATCTATTGTTGAAAGCAACACTCTCCCATTAAAGGGAGGAGCTATTAAAATACTACAAGACACTGATGTTGTGGAATCTTCTAGAGAAAGGGAAGAGATGACATCATTATTAGGGTCATCAAGCACAAGCAATGTCCTAGGTCATGGTTACCCTCTACAAAACCGAGCCATGCCATGTTACAATAATACTAATGAATACACTCAGGTTTATAACTTGAGCTATGTTCAAACACAGCTTGAGTTATACCAAAAACAACAAAATGGCTCATACAATGGTAGGTTGAATAACAACCAAATTCAGAACCACCCCACTTTGCTCCAAGGGTATATGAACATAGGGTCTTCTTCTTCTTCAGCTGTGATGCACAACAATGGTGGTGGTTCTAGTGATTGGAGTTATAATGGAGTTGGTTTTATAGGGAATAATAACAATGGTCTAGTTGGAATGACTTCAAAATCTTCTTCATCTTTGATGGTCAATGATGGCATTGTTGGAATGGCTTCAAATTCTTCTTCAAGTAATGCAAAGGGGTTGTCTTTTATGGTTGATTATGACCTTGCTTCTGAAGGATATAGTGGCTGGTTGATGGATTCCTTCGATGCTCCAAATGCTTGA 1632 0.3787 MDDSYNWLSFIPLSPINSSLPPYLQESQSHNPFSLETSMDENMDSPFQNHDWNLINSHSSNEILEPEDFLGVRSSENQSDILALNEIQSNDSDYLFTNNNFSVTPIQNSLVAATNLGNYEYQENNMQPLTLSTGNVGNNDSTNQRSGDNNTNNAVQVARRNSLQYSRQRKSIYRGVSRHISTGKYEAHIWDSSIKREGKSKSGFQVYLGGYDTEEKAARAHDLAALKYWGESTITNFPIGNYEKELEEMKNMTKKDFVAAIRRKSTGFRRGASPYRGVTKHSKNGKWQAKIGRVDGHKDLYLGTYSTEEEAAEAYDIAAIKFRGPNAVTNFDINRYDVKSIVESNTLPLKGGAIKILQDTDVVESSREREEMTSLLGSSSTSNVLGHGYPLQNRAMPCYNNTNEYTQVYNLSYVQTQLELYQKQQNGSYNGRLNNNQIQNHPTLLQGYMNIGSSSSSAVMHNNGGGSSDWSYNGVGFIGNNNNGLVGMTSKSSSSLMVNDGIVGMASNSSSSNAKGLSFMVDYDLASEGYSGWLMDSFDAPNA* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0968 543 CDD AP2 275 334 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 ProSiteProfiles AP2/ERF domain profile. 274 332 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 498 - -
Lan10g0968 543 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
Lan10g0968 543 Gene3D AP2/ERF domain 274 334 IPR036955 GO:0003700|GO:0006355
Lan10g0968 543 SUPERFAMILY DNA-binding domain 171 239 IPR016177 GO:0003677
Lan10g0968 543 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 SMART rav1_2 274 338 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 CDD AP2 171 239 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 Pfam AP2 domain 172 231 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 Pfam AP2 domain 275 324 IPR001471 GO:0003700|GO:0006355
Lan10g0968 543 SUPERFAMILY DNA-binding domain 273 333 IPR016177 GO:0003677
Lan10g0968 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 6 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0968 Lan-Chr10 14631425 14634378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0968 3 533 AP2-EREBP Transcription Factor Family AT1G51190 46.441 1.76e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan10g0968 AP2 5.8e-12 CL0081