Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0966 ATGGATCGTTCTCCTCAACCTTCTTTAAACAACAACAACAACAACAAAGAAGAAGAAGAAGAAGAAGAAAATGGATCTCCATTTTTCAAATTCATAAGCAATTTATCACCAATACAGCATGTCAATTCATGTCACGTGACACAAGGCGGGTCTGTTCGATTCAATTCTCCTCGTATTACCTCTCACCACGACAGCCAAACTAAGTTATTAGAAAAATTTACTACTCAATCACTCGTTGCCGATAGCGATCAAACACTTGAGTCGATGCCTGAACCTGTGCAGGGTGATAAAGATTGCGACGAGAATGTGTTAGCCTCAAATGCGAGTACAGAGGACATCTCCGAAGGTGGTTATGAGGCTAGTCTAAAGCACCATGTCGTTCTTAGACGCTGTCTACAATTTGGGGAACCTACTATTGGAAGTCACAATTCTCACGCGAACTTGAATGTAAATTCAAGCAAAACAAAAATGTTCAAGCTTTCTGAACCTGTCGCTTCGTTGTTTCCTGAACAATATAGTGGAGCTGCAAATGCATCAGATGGTTTACAGGGTACGAAATCGACATCGTTAATAAGCTTGCATAAAATGGACAACATGAAGAGATCCTTAATTGCTTCAAATATGGATGGGCAACCATCAGTTGACACTGGAAATGAGAGCCATGAAGTTGATGCCTCAAAAGCCGCTGATTCCTTTATCTCCGAGCCTCTTAGCTTGGCAGAACCTACTTCCTTGAATCCTGCAAGTGTCCATGGTAAGAGGAAACTAAGCGCTACCGATGCTGGAAATTCTGAGGAATGCAACCAATCTAGCCGCAGCAAGAAAAGGAAGAAAACATCAACCACCAATGATGAGAATGGATGTAAACGCTGCAACTGTAAGAAGACTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTATTGTTCCGACCCATGTTCTTGCCAAAGCTGCTTAAATAGACAAGAGTATCAAGATGCTGTTCTTGAGGCAAGACGGCAAATCGAATCACGCAATCCACTTGCATTTCTTCCCAAAGTTGTACAGCATACACCTGATATTCCCTCAACTAATATGGAGGATACAAATCTGACAACACCATCATCGGCGAGGCATAGAAGGGGTTGCAATTGCAAAAGATCATTGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCCAGCGGATGTCGATGCGAGGGGTGTAAGAATGCATATGGCAGGAAAGAAGATTTTGTTCCAATTGAACATGCTTTGAGTAAAGAAAGGGTGGTTGAAAAAGGATTGGCTAGCACATTTGATGATAAACTGGACACGGTAGTAAGCAAGATAGAGTTGTATGACCTACACGGCCTCTCTCCAATAACACCCTCGTTGCAATGCTCCGACCAAGGAAAGGAGGCTGCAAAATCCCGATTTCTTTCTGCGAAACATCTACCATCCCTTGACTCAGCTGATGTCAACATGATCCCATCTCATCCAAATTACACAAATGAGACGGGATCATATGAACGGCAGATGGATCAATTATCACCAAAATGTAATTCAGTTGCCAATGTACCTCAACTTACTCCTGTGTCATTGTCATGCTCTGCTAAAACAAAAGAGTGGACAGATATTCTACAGTTGCTACTCTCCTATGGACTGATTAGCCACTTATCGGGTAGCTCTCTTCATCGGTGCAGTTCACCAAACACTCCAAGGACTGGAATAGGTGAAACAAAATGTGTAGATCAGTCTCTTCAATCAAATAGCAGAAGGCTATTTGACATTGTAGAAGATGCAACACCTGATATATTGAAAGAAGTTTCAACTCCAACTAATCCTGTGAAAGCAAATTCGCCTAACCAAAACAGAGTTTCTCCTCCTCATGGTTATAGTCATCTACGTGCACTTGGTAGTGGCTTGAGAAGTGGCAGAAGATTTATTCCGAAAGCTCTACCTTCTTTCACACCATATACCCCTTGCACTGATTCCAAAGGCAATGACAATGAGAATTTGGGTAACAGTTCCAGCAAGTAA 2043 0.4165 MDRSPQPSLNNNNNNKEEEEEEENGSPFFKFISNLSPIQHVNSCHVTQGGSVRFNSPRITSHHDSQTKLLEKFTTQSLVADSDQTLESMPEPVQGDKDCDENVLASNASTEDISEGGYEASLKHHVVLRRCLQFGEPTIGSHNSHANLNVNSSKTKMFKLSEPVASLFPEQYSGAANASDGLQGTKSTSLISLHKMDNMKRSLIASNMDGQPSVDTGNESHEVDASKAADSFISEPLSLAEPTSLNPASVHGKRKLSATDAGNSEECNQSSRSKKRKKTSTTNDENGCKRCNCKKTKCLKLYCDCFAAGIYCSDPCSCQSCLNRQEYQDAVLEARRQIESRNPLAFLPKVVQHTPDIPSTNMEDTNLTTPSSARHRRGCNCKRSLCLKKYCECYQANVGCSSGCRCEGCKNAYGRKEDFVPIEHALSKERVVEKGLASTFDDKLDTVVSKIELYDLHGLSPITPSLQCSDQGKEAAKSRFLSAKHLPSLDSADVNMIPSHPNYTNETGSYERQMDQLSPKCNSVANVPQLTPVSLSCSAKTKEWTDILQLLLSYGLISHLSGSSLHRCSSPNTPRTGIGETKCVDQSLQSNSRRLFDIVEDATPDILKEVSTPTNPVKANSPNQNRVSPPHGYSHLRALGSGLRSGRRFIPKALPSFTPYTPCTDSKGNDNENLGNSSSK* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0966 680 MobiDBLite consensus disorder prediction 609 630 - -
Lan10g0966 680 ProSiteProfiles CRC domain profile. 287 414 IPR005172 -
Lan10g0966 680 MobiDBLite consensus disorder prediction 1 25 - -
Lan10g0966 680 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 100 672 - -
Lan10g0966 680 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 15 76 - -
Lan10g0966 680 MobiDBLite consensus disorder prediction 269 286 - -
Lan10g0966 680 MobiDBLite consensus disorder prediction 243 286 - -
Lan10g0966 680 MobiDBLite consensus disorder prediction 659 680 - -
Lan10g0966 680 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 377 412 IPR005172 -
Lan10g0966 680 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 289 324 IPR005172 -
Lan10g0966 680 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 100 672 IPR044522 GO:0003700
Lan10g0966 680 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 15 76 IPR044522 GO:0003700
Lan10g0966 680 MobiDBLite consensus disorder prediction 609 633 - -
Lan10g0966 680 SMART CXC_2 286 327 IPR033467 -
Lan10g0966 680 SMART CXC_2 374 415 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0966 Lan-Chr10 14621918 14625613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0966 106 417 CPP Transcription Factor Family AT4G14770 39.385 1.07e-58 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lan10g0966 TCR 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0966 K21776 - gmx:547664 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0966 10 14621918 14625613 Lan6g1768 6 28965814 28971815 LSH