Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0953 ATGCCTGAACCTGTGCAGGGTGATAAAGATTGCGACGAGAATGTGTTAGCCTCAAATGCGAGTACAGAGGACATCTCCGAAGGTGGTTATGAGGCTAGTCTAAAGCACCATGTCGTTCTTAGACGCTGTCTACAATTTGGGGAACCTACTATTGGAAGTCACAATTCTCACGCGAACTTGAATGTAAATTCAAGCAAAACAAAAATGTTCAAGCTTTCTGAACCTGTCGCTTCGTTGTTTCCTGAACAATATAGTGGAGCTGCAAATGCATCAGATGGTTTACAGGGTACGAAATCGACATCGTTAATAAGCTTGCATAAAATGGACAACATGAAGAGATCCTTAATTGCTTCAAATATGGATGGGCAACCATCAGTTGACACTGGAAATGAGAGCCATGAAGTTGATGCCTCAAAAGCCGCTGATTCCTTTATCTCCGAGCCTCTTAGCTTGGCAGAACCTACTTCCTTGAATCCTGCAAGTGTCCATGGTAAGAGGAAACTAAGCGCTACCGATGCTGGAAATTCTGAGGAATGCAACCAATCTAGCCGCAGCAAGAAAAGGAAGAAAACATCAACCACCAATGATGAGAATGGATGTAAACGCTGCAACTGTAAGAAGACTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTATTGTTCCGACCCATGTTCTTGCCAAAGCTGCTTAAATAGACAAGAGTATCAAGATGCTGTTCTTGAGGCAAGACGGCAAATCGAATCACGCAATCCACTTGCATTTCTTCCCAAAGTTGTACAGCATACACCTGATATTCCCTCAACTAATATGGAGGATACAAATCTGACAACACCATCATCGGCGAGGCATAGAAGGGGTTGCAATTGCAAAAGATCATTGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCCAGCGGATGTCGATGCGAGGGGTGTAAGAATGCATATGGCAGGAAAGAAGATTTTGTTCCAATTGAACATGCTTTGAGTAAAGAAAGGGTGGTTGAAAAAGGATTGGCTAGCACATTTGATGATAAACTGGACACGGTAGTAAGCAAGATAGAGTTGTATGACCTACACGGCCTCTCTCCAATAACACCCTCGTTGCAATGCTCCGACCAAGGAAAGGAGGCTGCAAAATCCCGATTTCTTTCTGCGAAACATCTACCATCCCTTGACTCAGCTGATGTCAACATGATCCCATCTCATCCAAATTACACAAATGAGACGGGATCATATGAACGGCAGATGGATCAATTATCACCAAAATGTAATTCAGTTGCCAATGTACCTCAACTTACTCCTGTGTCATTGTCATGCTCTGCTAAAACAAAAGAGTGGACAGATATTCTACAGTTGCTACTCTCCTATGGACTGATTAGCCACTTATCGGGTAGCTCTCTTCATCGGTGCAGTTCACCAAACACTCCAAGGACTGGAATAGGTGAAACAAAATGTGTAGATCAGTCTCTTCAATCAAATAGCAGAAGGCTATTTGACATTGTAGAAGATGCAACACCTGATATATTGAAAGAAGTTTCAACTCCAACTAATCCTGTGAAAGCAAATTCGCCTAACCAAAACAGAGTTTCTCCTCCTCATGGTTATAGTCATCTACGTGCACTTGGTAGTGGCTTGAGAAGTGGCAGAAGATTTATTCCGAAAGCTCTACCTTCTTTCACACCATATACCCCTTGCACTGATTCCAAAGGCAATGACAATGAGAATTTGGGTAACAGTTCCAGCAAGTAA 1779 0.4216 MPEPVQGDKDCDENVLASNASTEDISEGGYEASLKHHVVLRRCLQFGEPTIGSHNSHANLNVNSSKTKMFKLSEPVASLFPEQYSGAANASDGLQGTKSTSLISLHKMDNMKRSLIASNMDGQPSVDTGNESHEVDASKAADSFISEPLSLAEPTSLNPASVHGKRKLSATDAGNSEECNQSSRSKKRKKTSTTNDENGCKRCNCKKTKCLKLYCDCFAAGIYCSDPCSCQSCLNRQEYQDAVLEARRQIESRNPLAFLPKVVQHTPDIPSTNMEDTNLTTPSSARHRRGCNCKRSLCLKKYCECYQANVGCSSGCRCEGCKNAYGRKEDFVPIEHALSKERVVEKGLASTFDDKLDTVVSKIELYDLHGLSPITPSLQCSDQGKEAAKSRFLSAKHLPSLDSADVNMIPSHPNYTNETGSYERQMDQLSPKCNSVANVPQLTPVSLSCSAKTKEWTDILQLLLSYGLISHLSGSSLHRCSSPNTPRTGIGETKCVDQSLQSNSRRLFDIVEDATPDILKEVSTPTNPVKANSPNQNRVSPPHGYSHLRALGSGLRSGRRFIPKALPSFTPYTPCTDSKGNDNENLGNSSSK* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0953 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 236 IPR005172 -
Lan10g0953 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 289 324 IPR005172 -
Lan10g0953 592 MobiDBLite consensus disorder prediction 571 592 - -
Lan10g0953 592 SMART CXC_2 286 327 IPR033467 -
Lan10g0953 592 SMART CXC_2 198 239 IPR033467 -
Lan10g0953 592 MobiDBLite consensus disorder prediction 521 545 - -
Lan10g0953 592 MobiDBLite consensus disorder prediction 181 198 - -
Lan10g0953 592 ProSiteProfiles CRC domain profile. 199 326 IPR005172 -
Lan10g0953 592 MobiDBLite consensus disorder prediction 155 198 - -
Lan10g0953 592 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 20 584 - -
Lan10g0953 592 MobiDBLite consensus disorder prediction 521 542 - -
Lan10g0953 592 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 20 584 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0953 Lan-Chr10 14199590 14202735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0953 18 329 CPP Transcription Factor Family AT4G14770 39.385 5.78e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lan10g0953 TCR 4.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0953 K21776 - gmx:547664 539.65