Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0939 ATGGATTCACAGAAGAAAATGGTAATAGCTCTTGTAGTTGGCAGCACTGCACTTGTTGCACTTGGTTTGTGTTTTCTATTCTACAGGATTTATTATACCAAGTATTATTCATCAAAATCCAGTAAGAAAAATGTTCAAACATCAGAAGGCCAAGATGCTGAGAAAGGGGTAGCTTTATCTCCATTTTTGAGCAAATTCAGTTCTATAAAGCTGGTTGGTATGAAGGAATGTGTTCCAATAATTGATTATAAGCAGATAGAAAAGGGCACCAACAATTTCAAGGAAAGTAACATCTTAGGTGAGGGTGGTTTTGGTTGTGTTTACAAGGCTCGGTTGGATGACAACTTGGATGTTGCTGTCAAGAAACTTCATTGCGAAAAAAGTCAGTATGTTGAGAAAGAATTTGAGAATGAGGTGGATTTGTTAAGTAAAATTCAACATCCAAATATAATTTCTTTACTGGGTTGTAGCAGTAATGAGGATACCAAGTTTATTGTCTATGAACTGATGCAGAATGGATCATTGGAAACTCAATTACATGGACCCTCTCATGGTTCTGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTGAAATATCTGCATGAGCATTGTTTCCCTCCATTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTGGATGCAAGCTTCACTGCCAAGGTCTCTGATTTCGGTCTAGCCGTAATTGATGGGTCACAAAACAAGATTAACATCAACCTTTCAGGCACCTTAGGCTATGTAGCTCCTGAGTATATTTTAGATGGTAAATTGACCGATAAAAGCGATGTCTTTGCTTTCGGGGTTGTGCTTCTTGAGCTTCTACTAGGAAGGAAGCCTGTGGAGAAACTGGCACCACATCAATGTCAATCTATTGTCACATGGGCTATGCCACAACTCACAGACAGATCCAAGCTTCCAAATATTGTGGATCCTGTGATTAAGGATACAATGGATCTCAAGCACTTATACCAGGTTGCTGCTGTGGCTGTGCTATGTGTGCAACCGGAGCCAAGCTACCGGCCATTGATTAAAGATGTTCTCCATTCACTCGTCCCTCTTGTGCCCGTTGAGCTCGGAGGAACACTGAGAGTTTCACAAGTGACACAACAACTCTTCCCTATTGATTCAACAGTGAATTGTACCCAATGA 1191 0.4022 MDSQKKMVIALVVGSTALVALGLCFLFYRIYYTKYYSSKSSKKNVQTSEGQDAEKGVALSPFLSKFSSIKLVGMKECVPIIDYKQIEKGTNNFKESNILGEGGFGCVYKARLDDNLDVAVKKLHCEKSQYVEKEFENEVDLLSKIQHPNIISLLGCSSNEDTKFIVYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCFPPLIHRDLKSSNILLDASFTAKVSDFGLAVIDGSQNKININLSGTLGYVAPEYILDGKLTDKSDVFAFGVVLLELLLGRKPVEKLAPHQCQSIVTWAMPQLTDRSKLPNIVDPVIKDTMDLKHLYQVAAVAVLCVQPEPSYRPLIKDVLHSLVPLVPVELGGTLRVSQVTQQLFPIDSTVNCTQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0939 396 ProSiteProfiles Protein kinase domain profile. 93 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0939 396 SMART serkin_6 93 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0939 396 Gene3D Transferase(Phosphotransferase) domain 1 170 370 - -
Lan10g0939 396 Gene3D Phosphorylase Kinase; domain 1 58 169 - -
Lan10g0939 396 PANTHER OS01G0750732 PROTEIN 3 385 - -
Lan10g0939 396 Pfam Protein tyrosine and serine/threonine kinase 96 330 IPR001245 GO:0004672|GO:0006468
Lan10g0939 396 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Lan10g0939 396 SUPERFAMILY Protein kinase-like (PK-like) 74 364 IPR011009 -
Lan10g0939 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lan10g0939 396 PANTHER BNAA04G14780D PROTEIN 3 385 - -
Lan10g0939 396 CDD STKc_IRAK 99 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0939 Lan-Chr10 14036230 14040155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0939 2 310 Receptor kinase-like Gene Family AT1G80640 50.485 5.45e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lan10g0939 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0939 - - lang:109358848 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0939 10 14036230 14040155 Lan3g1099 3 23337648 23342193 LSH
Lan10g0939 10 14036230 14040155 Lan3g1099 3 23337648 23342193 PCT
Lan3g1099 3 23337648 23342193 Lan10g0939 10 14036230 14040155 PCT