Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0938 ATGGATGATACTAGAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCTGTTGATGATGATCCAATATGCCTCAAGCTTTTGGAGAGATTGCTCACAAGTTGTCAATATGATGTAACTGTGACTAAAAACGCGATATCGGCGTTGAAGTTGTTGAGAGAGAATAAAAACAAATTTGATCTGGTAATCAGTGATGTTGTAATGCCAAACATGGATGGATTGAAGTTGCTTGAGCTAGTAGAACTTGAGATGGACTTACCTGTCATAATGTTGTCTGGAAATGATGATCCGAAGATGGTGATGAAGGGAATTACTCGCGGAGCTTGCGATTATCTTCTGAAACCGATTAGAATTGAAGAGCTTAAGAACATATGGCAGCATGTAATAAGGAAGAAGAAAAAGAAGATTGACTCAAAGGAGCAGAACAAAACTAACAACCAAGACATACCTGATTCTGGTCTTGGCAATGCAGTAGAATCTGCAACAACAGGAGATTCCGATCAAAATGAGAAACAAACAAGAAAAAGGAAGGATCACGATGAAGATGAATATGACGATGGCGACGAGTATGAGAGTAATGGTGATGATAATGAGGACCCATCTAACGAGAAAAAGGCTCGAGTTGTTTGGTCCGTGGAGCTGCATCGCAAGTTTGTTTCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTACCGAAAAAAATTCTCGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTTCAGAAATATAGACTTTATTTGAAAAGAATTAGCTGTGTGGCAAACAAACAGGCTAATATGGTGGCAGCCTTAGGCAGCGCCGATTCATCGTATTTGAGAACGGGTTCTCTGAACGGTGTTGGAGGATTTCAAACATTGAGTGGCTATGGACAATTTCCTCATAACAATGCTGCTTTCAAATCCTTTCCGACCAGTGGGATGATTGGTAGATTGAACACTCCTTCTAGTCTTTTCGGAACACATCAGTTGGGCCAAAATTTAAACAATTCTGCAAATGATCAACATAAGTTTCAATCGGCCATTGGCTGCGATTACCTGAACGGTGTTCACGGAATTCCAGCATCTGTTAGCCTTGTTCAAAACCTGACCAATGTTGATGATACTAAAATACCTTTTCCTATCTTGAATAATAAACTCGCAGATCAAATGCCGAAAGTAACAATGGGTTCTGCATCTACTCCAATTTTCGGTATCTCAAACAATGCCTTGATGTTGGAATCAAATCCTCAGGACACACAAGAAAATTCAGAATTTCCTTTCTCTTTGGTGAATAATAGTAGTTGTAATGATATTTGGTCAAGTGCTGTGCATTCATTTAGGACAAGTTCTTTCCCACCAAGTCAATGTTTTAGACAGACTCCTGCAGTTAACCTCACTTCATTGTCGAATCAGTGCCCTGATTCATTCACAGATATGCACTCTCAAAACAACGATGTTTCGTTTCAATGGTGGGATGACGCAAATGTTATCGGCAGCTCAATAAACTCTCCGACTCCTGTGAATGGTGTTGTTGATCCACAAGGCCATAATTCAACTAACTCGACCTTCGGTAGAAACTCGGACTTCAATTTTTCCAATCCCTTACAAATGAAGCATGACAGGGTCAGTGAATTGACCGGAGATTACTCATTGAAACCACATCAGGTGTATACCATGAACCACATTGCTGGAAGTCTTGGTCATTACAATGATGAATAA 1734 0.4014 MDDTRDQFPIGMRVLAVDDDPICLKLLERLLTSCQYDVTVTKNAISALKLLRENKNKFDLVISDVVMPNMDGLKLLELVELEMDLPVIMLSGNDDPKMVMKGITRGACDYLLKPIRIEELKNIWQHVIRKKKKKIDSKEQNKTNNQDIPDSGLGNAVESATTGDSDQNEKQTRKRKDHDEDEYDDGDEYESNGDDNEDPSNEKKARVVWSVELHRKFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANKQANMVAALGSADSSYLRTGSLNGVGGFQTLSGYGQFPHNNAAFKSFPTSGMIGRLNTPSSLFGTHQLGQNLNNSANDQHKFQSAIGCDYLNGVHGIPASVSLVQNLTNVDDTKIPFPILNNKLADQMPKVTMGSASTPIFGISNNALMLESNPQDTQENSEFPFSLVNNSSCNDIWSSAVHSFRTSSFPPSQCFRQTPAVNLTSLSNQCPDSFTDMHSQNNDVSFQWWDDANVIGSSINSPTPVNGVVDPQGHNSTNSTFGRNSDFNFSNPLQMKHDRVSELTGDYSLKPHQVYTMNHIAGSLGHYNDE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0938 577 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lan10g0938 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Lan10g0938 577 SMART REC_2 12 124 IPR001789 GO:0000160
Lan10g0938 577 MobiDBLite consensus disorder prediction 134 203 - -
Lan10g0938 577 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lan10g0938 577 SUPERFAMILY Homeodomain-like 203 261 IPR009057 -
Lan10g0938 577 Gene3D - 202 263 - -
Lan10g0938 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 489 IPR045279 GO:0009736
Lan10g0938 577 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Lan10g0938 577 MobiDBLite consensus disorder prediction 167 181 - -
Lan10g0938 577 MobiDBLite consensus disorder prediction 144 166 - -
Lan10g0938 577 Gene3D - 12 201 - -
Lan10g0938 577 CDD REC_typeB_ARR-like 14 128 - -
Lan10g0938 577 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Lan10g0938 577 PIRSF RR_ARR_type-B 1 573 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan10g0938 577 SUPERFAMILY CheY-like 11 134 IPR011006 -
Lan10g0938 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0938 Lan-Chr10 14029664 14032744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0938 6 535 Response Regulator Gene Family AT2G25180 46.583 1.87e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan10g0938 Response_reg 8.8e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0938 - K14491 lang:109358042 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0938 10 14029664 14032744 Lan3g1103 3 23379367 23383728 LSH
Lan10g0938 10 14029664 14032744 Lan15g1055 15 19579159 19583482 PCT
Lan10g0938 10 14029664 14032744 Lan3g1103 3 23379367 23383728 PCT
Lan15g1055 15 19579159 19583482 Lan10g0938 10 14029664 14032744 PCT
Lan3g1103 3 23379367 23383728 Lan10g0938 10 14029664 14032744 PCT