Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0936 ATGTCAAAATTTCACACCAACAACGTTGCATCCCTCGTCCTCGGCTACCATTCCAACTCCCCCACCACTCTCCGCCGCTTCTTATTCCACACCCTCCCCTGCGGTACCACCTCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACCACCACCACCACCACCACCACCACCATCACAACCCACCCAATACTAGCTTGTCCGATCTTCTCAACATCGCGGAGACTGAAACGAATGAGGAGACCAAGAAAAAGGAGGATGAGTTGGAGGAGCTGAAGAGGCTAGTCAATGAACTGCAACAGGATGCTCGTCGGAGAGTGGATGCGGCGGCCACCGTGAGACAGGTGGCGAAGGAGGATGTGAAGGTTAGAGAAACGCTTGCTATGCTTGGAGTCATTCCTCCTCTAGTTGCAATGCTTGATTATCATTACGACGAAGAAGAAGAAGATCGAGTTCATTCTCTCTATGCGTTGCTCAACCTCGGAATCGGAAACGATGCGAATAAAGCTGCAATTGTGAAAGTTGGTGCTGTTCACAAGATGCTTAAGTTGATTGAATCACCACAGGGCCAAAATTCATTGATCTCTGAGGCAATCGTTGCGAATTTTCTCGGATTGAGTGCTTTAGATTCGAACAAGCCGATAATTGGGTCCTCAACTGCAATACCATTTCTTGTTAGAACACTTCAGAGTTTAGATGATAAAACAAGCCCCCAAGCTAAGCAAGATGCTCTCAGAGCACTATACAATCTTTCAATCTTCCCAGGCAATGTTTCATGCATTTTGCAAACTGATTTGGTCCCTTTTATGGTAAACTCAATAGGAGACATGGAAATAACAGAGAGAATGCTCTCAGTTTTAAGCAATTTGGTATCAACTCAAGAGGGTAGAAAAGCTATTAGTGTGGTACCAGATGTGTTCCCTATCTTGGTGGATGTGTTGAATTGGACTGATTCACCGGAATGCCAAGAAAAGGCGTCATACATTTTGATGGTCATGGCACACAAATCATACAGCGACAGGCAGGCCATGATAGAGGCCGGAATCACTTCATCATTGCTCGAATTATCCCTTTTGGGTACCACATTGGCGCAGAAAAGGGCATCGAGGATATTGGAATGCTTGCGGGCAGACAAAGGGAAGCAGCAGCAGGTTTCTGGAAGGTTAGGTGCAAACATATCAGCCCCGATTTGTAGCTCTTCGCTGTCGTACGCAAGGACAGATGGAGGAGGAAAAGAGTGTTTGGAGGATGAGGAAGACACGATGAGTGAGGAGAAGAAAGCTGTGCAGCAGTTAATTCATCTGAGTTTTCAAAACAACATGAGGAATATTGTAAAGAGGGCCAACTTGCCTCACGATATCATCCCGTCTGATCATTTTAAGTCACTCACTCCAAGTTCAACTTCGAAGAGCCTGCCATTTTGA 1497 0.4315 MSKFHTNNVASLVLGYHSNSPTTLRRFLFHTLPCGTTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHNPPNTSLSDLLNIAETETNEETKKKEDELEELKRLVNELQQDARRRVDAAATVRQVAKEDVKVRETLAMLGVIPPLVAMLDYHYDEEEEDRVHSLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPQGQNSLISEAIVANFLGLSALDSNKPIIGSSTAIPFLVRTLQSLDDKTSPQAKQDALRALYNLSIFPGNVSCILQTDLVPFMVNSIGDMEITERMLSVLSNLVSTQEGRKAISVVPDVFPILVDVLNWTDSPECQEKASYILMVMAHKSYSDRQAMIEAGITSSLLELSLLGTTLAQKRASRILECLRADKGKQQQVSGRLGANISAPICSSSLSYARTDGGGKECLEDEEDTMSEEKKAVQQLIHLSFQNNMRNIVKRANLPHDIIPSDHFKSLTPSSTSKSLPF* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0936 498 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 498 - -
Lan10g0936 498 Coils Coil 436 459 - -
Lan10g0936 498 Gene3D - 88 257 IPR011989 -
Lan10g0936 498 SUPERFAMILY ARM repeat 112 400 IPR016024 -
Lan10g0936 498 Gene3D - 258 413 IPR011989 -
Lan10g0936 498 Coils Coil 95 133 - -
Lan10g0936 498 MobiDBLite consensus disorder prediction 72 92 - -
Lan10g0936 498 SMART arm_5 278 316 IPR000225 GO:0005515
Lan10g0936 498 SMART arm_5 144 187 IPR000225 GO:0005515
Lan10g0936 498 SMART arm_5 189 232 IPR000225 GO:0005515
Lan10g0936 498 SMART arm_5 233 277 IPR000225 GO:0005515
Lan10g0936 498 Coils Coil 39 39 - -
Lan10g0936 498 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0936 Lan-Chr10 14005717 14008746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0936 111 410 U-box Gene Family AT1G67530 28.947 4.60e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0936 - - gmx:100788575 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0936 10 14005717 14008746 Lan3g1722 3 29749586 29752526 LSH
Lan10g0936 10 14005717 14008746 Lan15g1057 15 19610355 19612784 PCT
Lan10g0936 10 14005717 14008746 Lan3g1106 3 23421493 23423610 PCT
Lan15g1057 15 19610355 19612784 Lan10g0936 10 14005717 14008746 PCT
Lan3g1106 3 23421493 23423610 Lan10g0936 10 14005717 14008746 PCT