Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0930 ATGGGAACCAATATGAGCTTTCCCAAAACTGAAAAGGTTTCTGAAGATGGAGAGAATGATCATCTCAGATATGGTTTATCATCTATGCAAGGGTGGCGTGGAACAATGGAAGATGCACATGCTGCACACCTTGATCTGGCTCCATCATCCGCTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGAGTGAAGAATACATAGCTGGAGATGTAGGAACCTCTCTTCAAAAAGCTTTTTTCAGAATGGACGAAATGATGCGTGGTCAAAGGGGATGGAGGGAATTAGCAATCTTGGGTGATAAGATAAACAAGTTTAATGGGATTTGGTCTCCCAGAAGTAGTGATGGTAATGACCAAGGTGATGATGATTGGGCTTTTGAGGAGGGACCTCATTCTGATTATGCTGGACCAAATTCAGGAAGCACTGCCTGTGTTGCACTTATCAGAAACAACCAACTTTTTGTTGCAAATGCCGGTGATTCGCGTTGTGTTATATCTAGGAACGGTCAGGCATACAATATGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCATAAAAGCTGGTGGTTTTATTTATGCTGGACGAATTAATGGGATTTTAAATCTTGCAAGAGCTATAGGTGACATGGAATTTAAACAGAACAAATTTCTTTCTTCCGAAAAACAAATTGTGACAGCCAATCCAGATATAAACACTGTTGACCTTTGTGATGAACATGAATTTATGGTGCTAGCATGTGACGGCATTTGGGATTGCTTGTCAAGTCAACAGGTGGTAGATTTTGTACATCAAGAACTCCTCTCAGTAACAAAACTTTCAGCAGTGTGTGAAAGAGTACTAGATAGATGTTTGGCACCATCAATCACAGTTGGTGAGGGATGTGATAACATGACCATGGTTTTGGTGCAGTTCAAGAAACAACAGCAGAAGAACAATCTTCTTCAACTGACCAAAACTGAAATGCAATGA 1035 0.4068 MGTNMSFPKTEKVSEDGENDHLRYGLSSMQGWRGTMEDAHAAHLDLAPSSASFFGVYDGHGGKVVAKFCAKYLHQQVLKSEEYIAGDVGTSLQKAFFRMDEMMRGQRGWRELAILGDKINKFNGIWSPRSSDGNDQGDDDWAFEEGPHSDYAGPNSGSTACVALIRNNQLFVANAGDSRCVISRNGQAYNMSRDHKPDLEIEKERIIKAGGFIYAGRINGILNLARAIGDMEFKQNKFLSSEKQIVTANPDINTVDLCDEHEFMVLACDGIWDCLSSQQVVDFVHQELLSVTKLSAVCERVLDRCLAPSITVGEGCDNMTMVLVQFKKQQQKNNLLQLTKTEMQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0930 344 CDD PP2Cc 23 326 IPR001932 -
Lan10g0930 344 ProSiteProfiles PPM-type phosphatase domain profile. 23 326 IPR001932 -
Lan10g0930 344 ProSitePatterns PPM-type phosphatase domain signature. 53 61 IPR000222 GO:0043169
Lan10g0930 344 SUPERFAMILY PP2C-like 4 328 IPR036457 -
Lan10g0930 344 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Lan10g0930 344 Pfam Protein phosphatase 2C 152 308 IPR001932 -
Lan10g0930 344 SMART PP2C_4 13 324 IPR001932 -
Lan10g0930 344 Gene3D - 1 327 IPR036457 -
Lan10g0930 344 MobiDBLite consensus disorder prediction 126 151 - -
Lan10g0930 344 PANTHER PROTEIN PHOSPHATASE 2C 1 334 IPR015655 GO:0004722|GO:0006470
Lan10g0930 344 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0930 Lan-Chr10 13942016 13946450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0930 1 328 PP2C-type Phosphatase Gene Family AT2G25070 74.775 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0930 K17499 - gmx:100793667 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0930 10 13942016 13946450 Lan3g1115 3 23492721 23498758 LSH
Lan10g0930 10 13942016 13946450 Lan3g1115 3 23492721 23498758 PCT
Lan3g1115 3 23492721 23498758 Lan10g0930 10 13942016 13946450 PCT