Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0908 ATGGAGAAAGGTTTAGTGGTAGATGAAAATATGTCCAATTTGACATCTGCATCAAGTGAAATAAGTGCTTCTTCTGGAGCCAGGAGTAACACAGGCTCTCTCTACCCTCAGTACTCCTCTACTTCAACACATCAAGAACCTGTACTCAAAAAGAAGAGAAATCTTCCAGGCCACCCAGACCCTGAGGCTGAAGTGATAGCCTTGAGTCCCAAGTCTCTCATTGCAACAAACCGGTTTGTATGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAAAAGAGGTCATAATTTGCCATGGAAACTAAAGCAAAGAAATAGCAAAGAACCATTAAGAAAGAAAGCATATGTGTGCCCGGAACCAACTTGTGTTCACCATGACCCATCAAGGGCCCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAACATGGGGAGAAGAACTGGAAGTGTGAGAAATGTTCTAAGCGTTATGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGAACAATTTTCTCTAGGAGAGACAGTTTTATTACTCACAGAGCATTCTGTGATGCTTTAGCACAGGAGAGTGCTATAGCGAATGTCACAACAATGAACCCTCTTATGTCCTCTCACACTCAACTTTACAACCATAGCTTCCAAGAACTATCACTAGTGAAAAGAGAACAAGAGTACTTCAATAATTTAAGACCAGAAATTCCACCATGGTTGAGAGGAGAAGCACCATTACTCTCAACACATTATGAAAACCCTAACCCTACAACTTTTCTTCCTCCTTTCCAATCCAATATTGAATCTTTTTCTTCTTCTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAGGCATCACAAATGGGTGCAACAGTAAGCAAAACTGCACCTTCTACAGCAACTCTTAGACCACACTTATTGCAGCAACAGGGTCACGTGCCTGAATGTACAACAATAACAGGTTATAATAGCTCCTCTTCTATGCCTTCATCTTCACCTCTTTCTGGCTCAATGGTTATTATGCCTTCACGTGAAGAGATAAGGACTGTTTTCTCTTATGGGAATAAAGCTGCAATAACCTCTGCCAATAATACTATAGGAACCGATCAAGAATCTTCTTTTTTCCATGAAATGATGGGTGGTGGTGGTGGTAATAGTGGTACTGTTCATAATGCTAGTGGGTTTGAGAGCTCATCATTCGAGGAAGCTATGAGAGGAATGTTTAATAATCCACCAAGAGATGATAAAAACTTTCAGGAACTTGTTTCAAAATCAGCGCAATCCCAGTTTGGTAATAAAAGCAACAAGGGTGCTAATGATGAAATAACTAGAGATTTTCTAGGTCTTGGAGCATTTTCTCAAAGAGGTTTCTTCAATATATCAGGGCTTGAACATTTAGATTCTTCATATGGGAAGCAAAATCAAAATCAAGCACCTTGGCAAGGCTAA 1503 0.4039 MEKGLVVDENMSNLTSASSEISASSGARSNTGSLYPQYSSTSTHQEPVLKKKRNLPGHPDPEAEVIALSPKSLIATNRFVCEICNKGFQRDQNLQLHKRGHNLPWKLKQRNSKEPLRKKAYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKNWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESAIANVTTMNPLMSSHTQLYNHSFQELSLVKREQEYFNNLRPEIPPWLRGEAPLLSTHYENPNPTTFLPPFQSNIESFSSSPHMSATALLQKASQMGATVSKTAPSTATLRPHLLQQQGHVPECTTITGYNSSSSMPSSSPLSGSMVIMPSREEIRTVFSYGNKAAITSANNTIGTDQESSFFHEMMGGGGGNSGTVHNASGFESSSFEEAMRGMFNNPPRDDKNFQELVSKSAQSQFGNKSNKGANDEITRDFLGLGAFSQRGFFNISGLEHLDSSYGKQNQNQAPWQG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0908 500 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Lan10g0908 500 MobiDBLite consensus disorder prediction 17 62 - -
Lan10g0908 500 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lan10g0908 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 476 - -
Lan10g0908 500 Gene3D Classic Zinc Finger 134 214 - -
Lan10g0908 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Lan10g0908 500 Gene3D Classic Zinc Finger 60 127 - -
Lan10g0908 500 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Lan10g0908 500 SMART c2h2final6 156 176 IPR013087 -
Lan10g0908 500 SMART c2h2final6 121 151 IPR013087 -
Lan10g0908 500 SMART c2h2final6 79 101 IPR013087 -
Lan10g0908 500 MobiDBLite consensus disorder prediction 17 45 - -
Lan10g0908 500 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0908 Lan-Chr10 13514994 13518923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0908 7 313 IDZ Gene Family AT1G55110 59.357 8.55e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0908 zf-C2H2 0.0097 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0908 K25870 - vvi:100257789 518.85