Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0882 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTATGGATTGATCGACGATTCTACCTTCAATGTTCCTCCTTCCGTTTTCACCTGGCCCCCAAATCCATCACCCAATCTCGGTGTTGAACTTGATGGCTCACTTGGTGGTTCTGATGGTCTCAAGGAGCCTGGTTCGAAGAAAAGGGGTAGATCTGATGCATGTGCTGGTTCTAGCTCTAAGGCTTGTCGGGAGAAGTTGCGGAGGGATAGGCTCAATGACAAGTTTGTTGAATTAAGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGTCTGCTATTCTGATTGATGCTGTCCGAATGGTTACACAGTTGCGGGGTGAGGCCCAGAAGTTGAAAGACTCAAATATGAGCCTTCAAGAGAAGATTACAGAGTTAAAGGCGGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAATTGGAGCAGCAGGCGAAGTCTATGAATGCCCAACCTGGTTTCATGCATCATACCCCTCCTGTAATCCCTGCTGCATTTGCTCCACAAAGCCAAGCTCCTGGCAACAAGTTGGTGCCATTTATGGGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCGGCTGCGGTGGATACTTCACAGGATCATGTCCTCCGCCCACCAGTTGCCTAA 690 0.4855 MVSPENTNWLFDYGLIDDSTFNVPPSVFTWPPNPSPNLGVELDGSLGGSDGLKEPGSKKRGRSDACAGSSSKACREKLRRDRLNDKFVELSSILEPGRPPKTDKSAILIDAVRMVTQLRGEAQKLKDSNMSLQEKITELKAEKNELRDEKQRLKAEKEKLEQQAKSMNAQPGFMHHTPPVIPAAFAPQSQAPGNKLVPFMGYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0882 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 139 IPR036638 GO:0046983
Lan10g0882 229 SMART finulus 73 124 IPR011598 GO:0046983
Lan10g0882 229 CDD bHLH_AtILR3_like 72 147 - -
Lan10g0882 229 Gene3D - 69 144 IPR036638 GO:0046983
Lan10g0882 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
Lan10g0882 229 Coils Coil 115 170 - -
Lan10g0882 229 MobiDBLite consensus disorder prediction 32 72 - -
Lan10g0882 229 CDD bZIP 133 165 - -
Lan10g0882 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Lan10g0882 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lan10g0882 229 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0882 Lan-Chr10 13095997 13098647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0882 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.936 1.82e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan10g0882 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0882 - - ccaj:109815088 347.821