Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0873 ATGGGGGCTAAGGCAAAGAAAGCTATGAAGACCAGTTTGAAAAAGGCTAACTCTAAAAAGCAATCTGATGGTGCTGATTTTTTGCCATTGGAAGGTGGCCCTGCTGTTAAAGTTCCCGAACAAAAACAACCACGGGAGGGTACTGCGAAGGTTTTGTATGTTGGTAGGATTCCACATGGGTTTTATGAGAAGGAGATGGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCAAGAAATAAAAAGACTGGACAATCAAAGCATTATGGGTTCATAGAATTCGAGTCTCCAGAGGTAGCAAAAATTGTAGCTGAAACTATGCACAATTATTTGCTTTTTGAACACCTTCTCCAGGTTCACTTGATACCTCCAGAGCATGTTCACCCAAAATTGTGGAGAGGTTTCAATTACCGTTACAAGCCACTGGATACTGTTCAAGTTGAACGGGAGCGACATGACAAGGAAAGAACATTGGAAGAGCACAATAAGTTGGTTGAAAAGATTCTGAAGCGTGACAAAAAACGACGGAAATTGATAGAGGCTGCTGGCATTGATTATGAAGTCCCCAAAATTGTGGGTAATGTCCAAGCTGCTCCAAAGAAAATCAAGTTTGAAGACTAA 633 0.4076 MGAKAKKAMKTSLKKANSKKQSDGADFLPLEGGPAVKVPEQKQPREGTAKVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGQSKHYGFIEFESPEVAKIVAETMHNYLLFEHLLQVHLIPPEHVHPKLWRGFNYRYKPLDTVQVERERHDKERTLEEHNKLVEKILKRDKKRRKLIEAAGIDYEVPKIVGNVQAAPKKIKFED* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0873 210 MobiDBLite consensus disorder prediction 1 42 - -
Lan10g0873 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Lan10g0873 210 SUPERFAMILY RNA-binding domain, RBD 43 139 IPR035979 GO:0003676
Lan10g0873 210 Coils Coil 151 175 - -
Lan10g0873 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Lan10g0873 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 209 - -
Lan10g0873 210 Gene3D - 3 125 IPR012677 -
Lan10g0873 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Lan10g0873 210 PANTHER - 1 209 - -
Lan10g0873 210 CDD RRM_NIFK_like 51 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0873 Lan-Chr10 12962823 12966107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0873 52 123 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 1.93e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0873 K14838 - gmx:100778780 332.798