Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan10g0872 | ATGACAGATGATCAATTTCAAGCTAGTGGGAACTGGTGGGATTCAGCTAGGAACTTGAGATTTGAAAGTGGAGAATCACAATCTTCATCTTCTTGCATCACCAACATAGGTAACTTTACTTGGCAACAACAAGATGTTGCAGAAACTACACAGAAGCTTGAGCCTCCAAATCATCATTCTGCCACTTCAAGTGACCCTAACATGCATATGATGGATTTAGGCCTTTCATCTCAAGCAATGGATTGGAACCAAGCATCATTGCTAGGTGAGAAAGCTGCAGAAAGCAGTTTCAGGTCCATGCTACAAGAGACTATGAGCTCACCAAGAACAAATATTCAACAAGAAAGTGGGGTGGGGTTGTCTCAACAAGTTCAATGGAAATCACAAAAGCTGTTCACTGAAGAGTATTCAACCAATGAATTCAAACAAGTGAATAAGGGTTTCTCTTTGGATCAAAACCAGTTTACACCTCAATATAGCACTGGGGACAGCAACCTGACAAGCCAAGCTGGTTTGCACTCAACTTTTCAGGTTGATTCCTCAGCTTTATATGGAACACCATCATCAATATTACAAGGAGTACTATTGGGACCTGACAATAATAACAGCTCCGTGAATTTTCCATACCCTAAAAGTTATGGATCTAACTCTTCTAATCATGAGTTGGTGCCTTCTTGGTCTAAAGTTCCTCAGTTCTTGAGAGCTTCATCTCCACCAAAACAACCACCTAGTAGCTTCTTTCCCCCATTACAAACCCCATTCTCCATGCCAAATTTTGATGTACAATCAAAGAATATATCTGAAGTAAGGGACTCAGGTACTGTGGTAAAGAAAAGTGGGAATGAGTCAGCATCCAAAAGACCCCGGAACGAAACCTCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCACCTTTTGGAAAGACTGATACAGCCTCAGTGCTATCTGAAGCCATTGAATTCATCAAATTCCTCCATCAACAAGTCAATGTTTTAAGTGCCCCGTATATGAAAAGTGGAGCTCCAGTACAGATTCAACAGAGTTCTGATAAATTTAAAGAAGAAGAGAGTCCCAAACAGGATCTGAGAAGCCGAGGGCTGTGTTTGGTTCCAGCTTCTACTAGTACATTCCCAATGACTCATGACACAATTGATTTTTGGACTTCAACATTTGGAGGGACTTCAAGATAA | 1233 | 0.4104 | MTDDQFQASGNWWDSARNLRFESGESQSSSSCITNIGNFTWQQQDVAETTQKLEPPNHHSATSSDPNMHMMDLGLSSQAMDWNQASLLGEKAAESSFRSMLQETMSSPRTNIQQESGVGLSQQVQWKSQKLFTEEYSTNEFKQVNKGFSLDQNQFTPQYSTGDSNLTSQAGLHSTFQVDSSALYGTPSSILQGVLLGPDNNNSSVNFPYPKSYGSNSSNHELVPSWSKVPQFLRASSPPKQPPSSFFPPLQTPFSMPNFDVQSKNISEVRDSGTVVKKSGNESASKRPRNETSSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEFIKFLHQQVNVLSAPYMKSGAPVQIQQSSDKFKEEESPKQDLRSRGLCLVPASTSTFPMTHDTIDFWTSTFGGTSR* | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan10g0872 | 410 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 9 | 244 | - | - | |
| Lan10g0872 | 410 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 245 | 397 | - | - | |
| Lan10g0872 | 410 | CDD | bHLH_AtbHLH_like | 296 | 347 | IPR045239 | - | |
| Lan10g0872 | 410 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
| Lan10g0872 | 410 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 290 | 339 | IPR011598 | GO:0046983 | |
| Lan10g0872 | 410 | Gene3D | - | 300 | 368 | IPR036638 | GO:0046983 | |
| Lan10g0872 | 410 | PANTHER | TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 | 245 | 397 | - | - | |
| Lan10g0872 | 410 | PANTHER | TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 | 9 | 244 | - | - | |
| Lan10g0872 | 410 | MobiDBLite | consensus disorder prediction | 359 | 378 | - | - | |
| Lan10g0872 | 410 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 300 | 354 | IPR036638 | GO:0046983 | |
| Lan10g0872 | 410 | MobiDBLite | consensus disorder prediction | 270 | 292 | - | - | |
| Lan10g0872 | 410 | MobiDBLite | consensus disorder prediction | 270 | 297 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan10g0872 | Lan-Chr10 | 12920018 | 12923814 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan10g0872 | 89 | 410 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G20640 | 44.301 | 8.46e-66 | 213 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan10g0872 | - | - | lang:109357749 | 787.719 |