Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0869 ATGTCTCTTGAAGACTCCCTAAGATCTCTTTCCCTTGATTACCTTAACCTTCTCATCAACGGCCAAGCTTTCAGTGACGTCACTTTCAGCGTAGAGGGGCGTCTGGTCCACGCGCACCGTTGCATCCTTGCAGCACGGAGCCTATTCTTCAGGAAATTCTTCTGCGGTGGTTCAGACCCGTCTGCATCATCGGGACTCATCGACCAAACCGGGATCCGGGTCAACCCATCCGGTTCACCACGGTCCAGCAACGGCGTCTTAGTTATACCTGTGAACTCAGTGGGATACGAAGTTTTCTTGCTTTTGCTTCAGTTTCTTTACAGTGGCCAAGTCTCTATCGTGCCTCAGAAACATGAAGCAAGGCCTAATTGCGGTGAGAGAGGTTGTTGGCACACGCATTGTTCCTCAGCCGTTGATCTTGCTCTTGATACACTCGCTGCCGCTAGATATTTTGGAGTTGAACAACTTGCATTGCTCACTCAGAAACAACTAGCTAGCATGGTAGAGAAAGCCTCAATTGAAGATGTAATGAAAGTGCTCCTTGCTTCAAGAAAACAAGACATGCAACAACTATGGACTACTTGTTCCCACCTAGTAGCCAAATCTGGCCTCCCCCCTGAGGTCCTAGCCAAGCACCTCCCCATCGAAATCGTTGCTAAGATCGAAGAGCTTCGTCTCAAATCCTCAATAGCACGCCGCTCCATGATGCCCCACCACCATCACCATCACCACCAGCATGACCTCAATGCGGCTGCAGACCTCGAGGACCAAAAAATCCGAAGAATGAGGAGGGCCTTAGACTCCTCCGATGTGGAACTCGTCAAGCTCATGGTAATGGGAGAAGGACTCAATCTGGATGAAGCGTTGGCCTTACACTACGCCGTAGAGAATTGCAGCAGAGAAGTGGTGAAAGCATTGCTCGAACTCGGGGCGGCCGATGTTAACTACCCGGCTGGCCCTGCGGGCAAAACCCCGCTACACATAGCGGCCGAAATGGTTTCGCCCGACATGGTCGCTGTATTGCTCGACCACCATGCTGACCCTAATGTCCGAACCGTGGACAATGTCACACCCTTGGACATACTCAGAACCCTAACCTCTGATTTCCTTTTCAAAGGTGCTATACCTGGATTAACACACATTGAACCAAACAAGCTAAGATTGTGCTTGGAACTTGTTCAATCCGCAGCTTTAGTGTTATCAAGGGAAGAAGGAAATGCAAACAATAACCCTCCTTCTTCAACAACAACAACATTGCCCATGTATCACCATCCTATGAATGATGATCATAATAGCAGTTCTAGCAGTGGCAACAATCACAACATTGCTAACCTCAACTTGGACTCCCGGTTGGTGTACCTTAACCTTGGTGCCACCGTTGGTTCGGGTCAGATGAGTGACGATCATGGTGGCCGCCACGGTGATCCAGCCATGTACCACCACTCTCATCATGACTATTAG 1461 0.4962 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGGSDPSASSGLIDQTGIRVNPSGSPRSSNGVLVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIEIVAKIEELRLKSSIARRSMMPHHHHHHHQHDLNAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDNVTPLDILRTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNPPSSTTTTLPMYHHPMNDDHNSSSSSGNNHNIANLNLDSRLVYLNLGATVGSGQMSDDHGGRHGDPAMYHHSHHDY* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0869 486 MobiDBLite consensus disorder prediction 464 486 - -
Lan10g0869 486 SUPERFAMILY POZ domain 8 166 IPR011333 -
Lan10g0869 486 CDD BTB_POZ_NPR_plant 8 168 - -
Lan10g0869 486 Pfam Ankyrin repeats (3 copies) 269 351 IPR002110 GO:0005515
Lan10g0869 486 Gene3D - 243 369 IPR036770 -
Lan10g0869 486 ProSiteProfiles BTB domain profile. 25 115 IPR000210 GO:0005515
Lan10g0869 486 Gene3D Potassium Channel Kv1.1; Chain A 4 201 IPR011333 -
Lan10g0869 486 SUPERFAMILY Ankyrin repeat 280 364 IPR036770 -
Lan10g0869 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 483 IPR044284 GO:0099402
Lan10g0869 486 MobiDBLite consensus disorder prediction 468 486 - -
Lan10g0869 486 ProSiteProfiles Ankyrin repeat region circular profile. 321 351 - -
Lan10g0869 486 Pfam BTB/POZ domain 16 117 IPR000210 GO:0005515
Lan10g0869 486 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515
Lan10g0869 486 SMART ANK_2a 321 350 IPR002110 GO:0005515
Lan10g0869 486 SMART ANK_2a 286 316 IPR002110 GO:0005515
Lan10g0869 486 MobiDBLite consensus disorder prediction 403 441 - -
Lan10g0869 486 SMART BTB_4 25 168 IPR000210 GO:0005515
Lan10g0869 486 PANTHER REGULATORY PROTEIN NPR5 1 483 - -
Lan10g0869 486 Pfam Domain of unknown function (DUF3420) 203 263 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0869 Lan-Chr10 12817547 12820735 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan10g0869 BTB 2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0869 K14508 - zju:107433767 738.028