Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0845 ATGCAGCAACAACAACAAATTGGGATGGAGAATTCTGAGTTATTCAAATTACTAGCTGGCACTAATAGCTCCTTCTTTCATTCAACAACAACAATGCACCAAAGCTTGTGTAGTAGTTCCTCTAATGATTATAATAATCACCCATTGGAGTTATCAGAAATTACTGATGCACTCTCTCAACAGCAGGATAGAGCTCTTGCTGCTTTGAAGAACCATAAGGAGGCTGAAAAGAGAAGAAGGGAAAGAATCAATTCTCACCTTAATCAGCTTCGAACTCTTCTCCATTGTAATTCTAAGACAGATAAGGCTTCACTTCTAGCAAAGGTAGTGAAGCGAGTGAAGGAACTTAAAAAGCAAACATCTGACATCACTGAACTCGAAACCCTTCCCTCAGAAACCGACGAGATCACCATACTCTCCATCAGTGATGAAGACTATAGTGATCTCGTTGGTGATGGAAGACTCATATTCAAGGCCTCATTATGTTGCGAGGATCGCTCAGACCTAATCCCTGACATCATCGAAATCCTCAACTCTCTTCATCTGAAAACCCTGAAAGCAGAAATGGTCACACTTGGTGGAAGAACACGAAACATTCTTGTTGTTGCTGCTGATAAATACCACAGCATTGAATCAATCCCATTCCTTCAGAACTCGTTCAAGTCTCTATTGGAACGTTCCAACTCCAGTGACAGATCAAAACGGCGCCGTAGGTTAAACTGA 723 0.4136 MQQQQQIGMENSELFKLLAGTNSSFFHSTTTMHQSLCSSSSNDYNNHPLELSEITDALSQQQDRALAALKNHKEAEKRRRERINSHLNQLRTLLHCNSKTDKASLLAKVVKRVKELKKQTSDITELETLPSETDEITILSISDEDYSDLVGDGRLIFKASLCCEDRSDLIPDIIEILNSLHLKTLKAEMVTLGGRTRNILVVAADKYHSIESIPFLQNSFKSLLERSNSSDRSKRRRRLN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0845 240 SMART finulus 73 122 IPR011598 GO:0046983
Lan10g0845 240 Gene3D - 61 127 IPR036638 GO:0046983
Lan10g0845 240 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 24 238 - -
Lan10g0845 240 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Lan10g0845 240 Coils Coil 58 78 - -
Lan10g0845 240 CDD bHLH_AtAIG1_like 62 138 - -
Lan10g0845 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Lan10g0845 240 PANTHER TRANSCRIPTION FACTOR BHLH30 24 238 IPR045847 GO:0003700|GO:0006355
Lan10g0845 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0845 Lan-Chr10 12464600 12466942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0845 30 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 65.196 3.24e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan10g0845 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0845 - K22484 gmx:100802566 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0845 10 12464600 12466942 Lan3g0604 3 7136397 7138508 LSH