Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0833 ATGAGAGAAGAAGATTCAAAAACATGGGAAGAAGAACTACCTTCCCTTAATGAACTTATGCCTTTATCCCAAACCTTAATCACTCCTCATCTCGCTATAGCCTTCGACATCACAACCACAACTCCCGACAACTTTCAACGACACCTCCATCATCGACAACTTCCAACGACACCTTCAAATCCTACAATTCACACCCAACACCAACAACAACAACCTTCTTCCGCTGACTCCGGCGATTTTGGCTCCGGCAACGGCGCCGACGAACCTGCACGGACCCTCAAGCGACCTCGTCTCGTGTGGACCCCACAGCTACACAAGCGATTCGTTGACGCCGTGGCCCACCTTGGCATCAAGAGCGCAGTGCCGAAAACTATAATGCAGTTCATGAGCGTTGATGGATTAACCAGAGAGAATGTTGCTAGCCATCTTCAAAAATACCGGCTTTATCTCAAGCGAATGCAGGGTCTTTCCAGCGGCGGCGGTGGTGGTGATGCGGCCACTGACCACTTGTTCGCGAGCTCGCCTGTGCCGCCGCATTTCTTGCAGCAGGGGAGGACTAATTCGGATCATTTCTTGCCCTTTGTGCAGGTTCCTGCCATTCAGCACCACCACCAGATGGCGGCTGTGCAGCATCATCAGCCGCAGTTTCACAGGCAGGCGGGGCATCTCGGGTCGCGGCCGAATGGGCACTATGAACATCCTTTTTTGTCTAGGCAGTCTCAGCAGCAGGTTCATAGAATAGGGGCACCAATGCATAGCCCTGTGGCTGGTTATGTTGAGGATATGGGATCGGAAAATGCGTCCGGAGGGAGAAAGATTCTTACTCTTTTTCCAACTGGAGATTAA 846 0.5177 MREEDSKTWEEELPSLNELMPLSQTLITPHLAIAFDITTTTPDNFQRHLHHRQLPTTPSNPTIHTQHQQQQPSSADSGDFGSGNGADEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKSAVPKTIMQFMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGDAATDHLFASSPVPPHFLQQGRTNSDHFLPFVQVPAIQHHHQMAAVQHHQPQFHRQAGHLGSRPNGHYEHPFLSRQSQQQVHRIGAPMHSPVAGYVEDMGSENASGGRKILTLFPTGD* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0833 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Lan10g0833 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Lan10g0833 281 MobiDBLite consensus disorder prediction 52 94 - -
Lan10g0833 281 Gene3D - 92 154 - -
Lan10g0833 281 MobiDBLite consensus disorder prediction 52 80 - -
Lan10g0833 281 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 2 281 - -
Lan10g0833 281 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Lan10g0833 281 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 281 IPR044841 GO:0003700|GO:0006355
Lan10g0833 281 MobiDBLite consensus disorder prediction 218 246 - -
Lan10g0833 281 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0833 Lan-Chr10 12200578 12202425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0833 1 281 G2-like Transcription Factor Family AT3G10760 54.094 2.16e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan10g0833 Myb_DNA-binding 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0833 - - jre:108983410 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0833 10 12200578 12202425 Lan6g1650 6 26068037 26070291 LSH
Lan10g0833 10 12200578 12202425 Lan3g0616 3 7557663 7560147 LSH