Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0824 ATGGAGGAGAACAAGCTCAAGAGAAAGATCGATGAGACCCTAACATTGGGTTATGGTAGCATCCCTATGGTTGGTGAAACATCTCCATCCAAGTCTTCAAAATTAATGACTTCAAATGAGTTAGATTCTTCACTGAAATCTGCTGAGCTTTCCAATGATGGAGATTATAAAGAAAATCCATCACTTGATTATGCTTGTAAATATTGTGATAAAAAGTTCACAAGCTCACAAGCACTTGGGGGGCACCAAAATGCTCATAAGCATGAGAGGTTCCTTAGAAAAGAGAAGGAGAAAATCATGTATGGTCATGAATTTGGTGCAAGGTTTTCAACAGTTACATTTCCAAGCATGCGTAACTACTACCAAGGTTCATCTTCAAACCTTGGCCATGGTGTTCAGTTGCACGACCCTATGGCTCAAATGCTTAGCATGCCTTTGCCCCGTTATTCAACCCTTGGCTATGATCATTTCCAAGGGCTAAATTTCTCCAACACACCCCTTTCTGGACACCAATTTGGGAACAATACTAGTTCTTATGGTGGTGGTGCAATTGCACCAAGATTCAACCTTCAAGGTTTGAAACTTTTTGGTGGACTCAATCCAATTTCTCCAACTTCTAACAATTATGTGGCTGCTCTTGAAAATCCTAGTGTGACTCTTGCTGCAATTCAAGCCTTTAATGTGTCTCATGATGCACCTCAAGCCTTAGAAGAGATTGATTTAACTCTCAAGCTTTGA 738 0.4038 MEENKLKRKIDETLTLGYGSIPMVGETSPSKSSKLMTSNELDSSLKSAELSNDGDYKENPSLDYACKYCDKKFTSSQALGGHQNAHKHERFLRKEKEKIMYGHEFGARFSTVTFPSMRNYYQGSSSNLGHGVQLHDPMAQMLSMPLPRYSTLGYDHFQGLNFSNTPLSGHQFGNNTSSYGGGAIAPRFNLQGLKLFGGLNPISPTSNNYVAALENPSVTLAAIQAFNVSHDAPQALEEIDLTLKL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0824 245 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 13 176 - -
Lan10g0824 245 SUPERFAMILY beta-beta-alpha zinc fingers 55 100 IPR036236 -
Lan10g0824 245 Pfam C2H2-type zinc finger 64 87 - -
Lan10g0824 245 Gene3D Classic Zinc Finger 37 112 - -
Lan10g0824 245 ProSitePatterns Zinc finger C2H2 type domain signature. 66 88 IPR013087 -
Lan10g0824 245 PANTHER ZINC FINGER PROTEIN JAGGED 13 176 IPR045320 GO:0003700
Lan10g0824 245 MobiDBLite consensus disorder prediction 21 42 - -
Lan10g0824 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Lan10g0824 245 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0824 Lan-Chr10 11834955 11835692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0824 64 167 C2H2 Transcription Factor Family AT5G10970 36.538 2.27e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0824 zf-C2H2_6 2.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0824 - - lang:109358021 499.204