Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0801 ATGGCTCGGAAGCGAAAACTCGCACCCAAATCCACCCAATCATTCGAACCCCCACTCAAGCAACAACAACAACACCAACCACTAGTAGAACCCGAAGAAGAAGAAGAAGAATATGAGGAAGTTGAAGAAGAAGTTGAAGTTGAAGTAGAAGAGGAAGAAGAAGAAGAAGAAGATCCACAAGAAGAAGAAGATGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGATCAAGAACAAGAACAACAACATGAACCTGATGATGATCCTATCGAGAAGCTTCTAGAACCATTAACGAAGGATCAGATTCTTACTCTACTTTCCGAAGCGGCGATTAAGCACCGCGATGTAGCTGATCGGATCCGCAGGATGGCTGATGCTGATGCGGCGCACAGGAAAATCTTCGTGCATGGTCTCGGATGGGATTCCACCGCCGAAACGTTAATCAGCACGTTCCGTCAGTATGGCGAGATTGAAGATTGCAAGGCGGTTTCCGATAAGGTTACTGGGAAATCTAAGGGGTATGGGTTTATTTTGTTTAAGACGCGCCGTGCAGCGCGTGAGGCGCTGAAGCAGCCGCAGAAGAAGATTGGTAATCGGATGACTGCTTGCCAGCTGGCGTCAATTGGGCCAGCTCAGCAGCAGACTGTTGCGGCTTCTGTTGCTGCTCCGTTGGTGGTGCCACAGACGGTTTCCGCTCCTGTGGGTTCGGAGTACACGCAGAGGAAGATCTATGTGAGTAATGTTGGGGCAGAATTGGACCCGAAGAGGCTGCGTGTGTTTTTTTCGAAGTATGGTGAGATTGAGGAAGGGCCATTGGGGCTTGATAAGGTCACTGGAAAACCGAAAGGGTTTTGCTTATTCGTGTATAAGAGTGCGGAGAGTGCGAAAGGTGCATTGTTGGAGCCGCATAAGGATTTTGAGGGGCATATTTTGCATTGTCAGAGAGCGATTGATGGCCCTAAGCCAGGGAGGTTGCAACAACCACCACAAGGGAATACTCGGGGGGTGCAATTTCAGAGGAGTGAGAATGCTGGGTTTATTGCTGGTGTTGGGGTTGGTGGTGTTGGTAGCAGTGCAGCTGCCGCTACACCGGGTCACTTGATGGCTCCAGCGGGGCCAGGGATCGGGTTTAATCAGGGAACAGTTGCGGCTGCGCAGGCACTGAATCCGGCTCTTGGACAGGCACTGAATCCGGCTCTTGGACAGGCACTGGCCTCTTTGCTTGCATCACAGGGTGCTACATTAGGGCTGACTAATTTGTTGGGGAGTCTAGGACCGAATGCGGTGGTTAATCCTGCTGTTCCGGCTGTGGGGCATGGGGTGCAGGCTGGTTACACTGCCCAGCCGAGTATAACCCAGGGTGTTATTGGAGGATATGGGAATCAGATTGCATATCCGACGAACCAGCATCAAATAGGGCAGGGTGGTTCTGGAAGAGGGCAACCTGGTGTTGGGCAATATGGGGGTATTGCCCATTACATGGGGCAGCAGTAG 1491 0.5097 MARKRKLAPKSTQSFEPPLKQQQQHQPLVEPEEEEEEYEEVEEEVEVEVEEEEEEEEDPQEEEDEEDEEEEEEEDQEQEQQHEPDDDPIEKLLEPLTKDQILTLLSEAAIKHRDVADRIRRMADADAAHRKIFVHGLGWDSTAETLISTFRQYGEIEDCKAVSDKVTGKSKGYGFILFKTRRAAREALKQPQKKIGNRMTACQLASIGPAQQQTVAASVAAPLVVPQTVSAPVGSEYTQRKIYVSNVGAELDPKRLRVFFSKYGEIEEGPLGLDKVTGKPKGFCLFVYKSAESAKGALLEPHKDFEGHILHCQRAIDGPKPGRLQQPPQGNTRGVQFQRSENAGFIAGVGVGGVGSSAAAATPGHLMAPAGPGIGFNQGTVAAAQALNPALGQALNPALGQALASLLASQGATLGLTNLLGSLGPNAVVNPAVPAVGHGVQAGYTAQPSITQGVIGGYGNQIAYPTNQHQIGQGGSGRGQPGVGQYGGIAHYMGQQ* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0801 496 MobiDBLite consensus disorder prediction 1 89 - -
Lan10g0801 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 222 IPR000504 GO:0003723
Lan10g0801 496 CDD RRM_RBM24_RBM38_like 130 205 - -
Lan10g0801 496 Gene3D - 231 344 IPR012677 -
Lan10g0801 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 198 IPR000504 GO:0003723
Lan10g0801 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 308 IPR000504 GO:0003723
Lan10g0801 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 342 IPR000504 GO:0003723
Lan10g0801 496 SUPERFAMILY RNA-binding domain, RBD 234 339 IPR035979 GO:0003676
Lan10g0801 496 PANTHER - 19 494 - -
Lan10g0801 496 Coils Coil 31 58 - -
Lan10g0801 496 CDD RRM_RBM24_RBM38_like 240 315 - -
Lan10g0801 496 Coils Coil 60 83 - -
Lan10g0801 496 SMART rrm1_1 131 203 IPR000504 GO:0003723
Lan10g0801 496 SMART rrm1_1 241 313 IPR000504 GO:0003723
Lan10g0801 496 MobiDBLite consensus disorder prediction 30 83 - -
Lan10g0801 496 Gene3D - 28 216 IPR012677 -
Lan10g0801 496 PANTHER GEO13361P1-RELATED 19 494 - -
Lan10g0801 496 SUPERFAMILY RNA-binding domain, RBD 129 212 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0801 Lan-Chr10 11022914 11026776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0801 239 323 C2H2 Transcription Factor Family AT2G19380 36.471 1.57e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0801 K12741 - gmx:100784200 477.633