Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0782 ATGGGGAGGCCTCCTTGCTGTGACATAGTTGGTATCAAGAAGGGTCCATGGACACCTGAAGAGGATATAATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTATCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTTAGGCCTGGAATCAAGAGAGGGAATTTCACTCCTCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGATATAAAGAATTATTGGAATACCCATCTAAAGAAGAAACTGAAGAAACTCCAGGTAGCATTGGACCCACACATTGCATCAGATTCAACAACCACTGGCCACTACCCATCAAAGAGTTTTAATGACACTACAAGTTTAGATGTCAGTAGAAGCCATTCTGCCTCATCCCTTAGGCCACAAACTCAGTCTCAGACTCAGTCCTCTACATATGCTTCAAGCACTGAGAACATCTCCAGGCTTCTACAAGGCTGGATGAGCACAAACCCGACCCCGACCCGCCCTGTTGCCATTCCTACAGAACAAGAAGAAGAAGAAGAAGAGTTTCAAAGCAATGATGAATTTGAAAACTGTGATAATAATCTAGTGAAGTCTGCATCAGTGCCAGGTGGTTTGAACTTTCAGCTTCAGCAGCAGCACAAAACCAAAGATGAACACGATATGGTATCACATGAAGAGTTTGATTCTATTTTGTCATTTGAGAACTTAAACACTTGTGCTTGGGACAAATCTACTTGTGATTCTATACCTGAAAACGGTTATTTAGCTGCTGCTGAGTCTGCTAAAAAGGTTCATGGTATGGAAGAAAAGATTAGGGAAATATCTGAGAACAGTAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTATTGGATGAAAATGTTGGTCATGTAGAGGAGATGATGGAATTATCTCATATGTTCTAA 1011 0.4144 MGRPPCCDIVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQVALDPHIASDSTTTGHYPSKSFNDTTSLDVSRSHSASSLRPQTQSQTQSSTYASSTENISRLLQGWMSTNPTPTRPVAIPTEQEEEEEEFQSNDEFENCDNNLVKSASVPGGLNFQLQQQHKTKDEHDMVSHEEFDSILSFENLNTCAWDKSTCDSIPENGYLAAAESAKKVHGMEEKIREISENSNAPPLSFLEKWLLDENVGHVEEMMELSHMF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0782 336 CDD SANT 16 61 IPR001005 -
Lan10g0782 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan10g0782 336 PANTHER TRANSCRIPTION FACTOR MYB60 1 328 - -
Lan10g0782 336 MobiDBLite consensus disorder prediction 128 174 - -
Lan10g0782 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan10g0782 336 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan10g0782 336 SMART sant 66 114 IPR001005 -
Lan10g0782 336 SMART sant 13 63 IPR001005 -
Lan10g0782 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan10g0782 336 ProSiteProfiles Myb-like domain profile. 13 61 IPR001005 -
Lan10g0782 336 CDD SANT 69 111 IPR001005 -
Lan10g0782 336 Gene3D - 13 66 - -
Lan10g0782 336 Gene3D - 68 133 - -
Lan10g0782 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan10g0782 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan10g0782 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0782 Lan-Chr10 10706530 10708859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0782 1 119 MYB Transcription Factor Family AT5G62470 89.076 6.41e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0782 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0782 K09422 - gmx:100817854 427.943