Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0773 ATGAAGTCACAACATTTAAACCATGGTGATAGTGGTTTCAATGAAGATATGAAGATTTTCCCTTCACCTCTTCCTTTTCAAGTTTTGAGCCCTTTAATGTTACAGCCACAGGAGAGTAAGGGAACAAAGAAAACAGATGATGAAGGAAATGGGTACTTTGGGGTTGAGATAAAAAACTTGTCTTTGAAACTTGGTGAGGAAGTAGAAGAAGCTAAGAGATCTGGTGCAGGAAAAAATGGGCATGTTAAGTTGTGTGTTAGAGGTCATTGGAGGCCAAATGAAGATTCAAAACTTAAGGAGCTTGTTGCCCAATATGGTCCTCAAAACTGGAACTTGATTGCAGAACATCTTCAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAATCAGATAGACCCAAGAATTAATAGAAGGGCTTTCTCTGATGAAGAAGGGGAGAGGCTCTTAACAGCTCATAAAATATATGGTAACAAATGGGCTATTATTGCTAGACTCTTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGAGATAATTCAAGTTGGTGCAAAAGAAGAAAACCAACTTCTGATCAAAGCCTTCCAAAGGCATTAAAATTGAATCTACCAAAAAACAATGCAGCCAGTGAATCAACCATGTCAAGCACCATAGATATATCTGCTTCAACATGCACCAACCTTTCCCTTACCCCCTCTTCAACTAAACTAAGTCCTAGCATTTTCAGTAAACTGAACCCAGTTCAACATCATACAGGCCATGCATCACTAATAGGTCTATCTAGAGAAAGGGAGATTTCAACAGGGGATGTTGGTTTTAACAAGTTTTTTGGTGATTGGAATGAAACATGTGAGCCTAGAGACATGGGAAAACTCATGGTTTTGGACCAATCCAATTTTTCAGATTCAAACTCTGAAGTATCACTATCTGAGTCAGTTGCCACCAATATGTTCAATCTCTCAATTTCTAGGGAAAGTGAAAATGTGGGTCATAAGATTAGCATGCCATTCATTGATTTTCTTGGAGTAGGAGCTAAATGCTGA 1077 0.3872 MKSQHLNHGDSGFNEDMKIFPSPLPFQVLSPLMLQPQESKGTKKTDDEGNGYFGVEIKNLSLKLGEEVEEAKRSGAGKNGHVKLCVRGHWRPNEDSKLKELVAQYGPQNWNLIAEHLQGRSGKSCRLRWFNQIDPRINRRAFSDEEGERLLTAHKIYGNKWAIIARLFPGRTDNAVKNHWHVIMARRQRDNSSWCKRRKPTSDQSLPKALKLNLPKNNAASESTMSSTIDISASTCTNLSLTPSSTKLSPSIFSKLNPVQHHTGHASLIGLSREREISTGDVGFNKFFGDWNETCEPRDMGKLMVLDQSNFSDSNSEVSLSESVATNMFNLSISRESENVGHKISMPFIDFLGVGAKC* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0773 358 ProSiteProfiles Myb-like domain profile. 134 184 IPR001005 -
Lan10g0773 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Lan10g0773 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 133 IPR017930 -
Lan10g0773 358 ProSiteProfiles Myb-like domain profile. 87 133 IPR001005 -
Lan10g0773 358 PANTHER MYB PROTEIN-RELATED 48 356 - -
Lan10g0773 358 SMART sant 138 186 IPR001005 -
Lan10g0773 358 SMART sant 86 135 IPR001005 -
Lan10g0773 358 CDD SANT 141 181 IPR001005 -
Lan10g0773 358 PANTHER OS08G0435700 PROTEIN 48 356 - -
Lan10g0773 358 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Lan10g0773 358 Pfam Myb-like DNA-binding domain 139 182 IPR001005 -
Lan10g0773 358 Gene3D - 140 211 - -
Lan10g0773 358 Gene3D - 86 138 - -
Lan10g0773 358 SUPERFAMILY Homeodomain-like 86 180 IPR009057 -
Lan10g0773 358 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0773 Lan-Chr10 10497613 10500595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0773 77 253 MYB Transcription Factor Family AT5G17800 60.000 7.19e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0773 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0773 K09422 - jre:109000849 387.882