Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0769 ATGTACCACAACTCTTCCGGTTCCGGTCGCCGGAACAATAACAACGCCATCGCCGGTTGCGGCACGAGTTCCCGTTCGGTGACGGAAACCGTTAACGGTTCTCACAATTTCGTGATAAAGGGTTACTCTCTGGCGAAGGGAATCGGCGTTGGGAAACACATCGCGAGTGAGACGTTTACCGTTGGAGGTTATCAGTGGGCTATATACTTTTATCCTGATGGGAAGAATCCTGAGGATAATTCCGCTTATGTTTCAGTGTTCATCGCTCTCGCGAGCGATGGCACCGATGTTCGGGCTTTGTTTGAGCTCACTCTTATTGATCAGTCGCCTAATGCCAAGCATAAGGTTCATAGCCACTTTGACCGCTCCCTCGAGAGCGGTCCTTATACTCTTAAGTATCGCGGCAGCATGTGGGGCTATAAGCGCTTTTTCAAACGAGCTCAACTTGAAGCTTCATCCTTCCTTAAGGATGACTGCTTGAAGATTAATTGCACTGTTGGTGTTGTGGTGTCATCCATAGATTGTTCAAAATTGAACACAATACATGTTCCCGAATCTGATATTGGAGCACATTTTGGTATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTCAATGGAGAACGGTTTCATGCACATAAGCTTGTATTGGCTGCTCGATCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGATCATGATGTAGTTGTTACTGACATGGAACCTAAGGTTTTTAAGGCTTTGCTTCATTTTATTTATAGAGATGCTCTTATAGAAGATGAAGAGCTCTATATGTCACGTTCATCATTTTTAGATTCAGTATCTGAAACATTTGCAGCTAAATTGTTAGCTGCTGCAGAAAAATATGGCTTGCCAAGGCTTAAGCTGATGTGCGAGTCTGTACTTTGCAAAGACATATCTATAGATTCTGTTGCCTATATTCTGGCCCTTGCTGATCGTTATCATGCTACACAACTAAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTATTGCGGTGATGCAATCTGATGGCTTTGAGTATCTTAAGGAAAACTGTCCATTGCTACAATCGGAACTGCTAAAGACAGTGGCAGGGTGTGAAGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGTGTATGGGCCCAATTTTCTGATGGCGGTGATACCAATGAAAGAAGTGTAAGACAACAAACCTGGGAAAATGGAGCGGAAAGAAGTCAAAGCTTATGGGTTCAGCTTTCTGATGGTGTTAACAACAACGACGATAGGAGTCCTGGGCAAGAAGCTTGA 1317 0.4343 MYHNSSGSGRRNNNNAIAGCGTSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASDGTDVRALFELTLIDQSPNAKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLNTIHVPESDIGAHFGMLLENEEGSDVTFSVNGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKVFKALLHFIYRDALIEDEELYMSRSSFLDSVSETFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYHATQLKSICLQFSAENLIAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNERSVRQQTWENGAERSQSLWVQLSDGVNNNDDRSPGQEA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0769 438 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 31 170 IPR008974 GO:0005515
Lan10g0769 438 CDD MATH 33 166 IPR002083 GO:0005515
Lan10g0769 438 ProSiteProfiles BTB domain profile. 202 268 IPR000210 GO:0005515
Lan10g0769 438 ProSiteProfiles MATH/TRAF domain profile. 32 166 IPR002083 GO:0005515
Lan10g0769 438 CDD BTB_POZ_BPM_plant 188 310 - -
Lan10g0769 438 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 386 IPR045005 GO:0016567
Lan10g0769 438 Gene3D Potassium Channel Kv1.1; Chain A 178 307 IPR011333 -
Lan10g0769 438 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 16 386 - -
Lan10g0769 438 SMART math_3 37 149 IPR002083 GO:0005515
Lan10g0769 438 SUPERFAMILY TRAF domain-like 29 168 - -
Lan10g0769 438 MobiDBLite consensus disorder prediction 1 21 - -
Lan10g0769 438 SMART BTB_4 202 313 IPR000210 GO:0005515
Lan10g0769 438 Gene3D - 312 386 - -
Lan10g0769 438 CDD BACK_AtBPM-like 310 371 IPR034090 -
Lan10g0769 438 MobiDBLite consensus disorder prediction 395 438 - -
Lan10g0769 438 Pfam BTB/POZ domain 194 311 IPR000210 GO:0005515
Lan10g0769 438 SUPERFAMILY POZ domain 181 311 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0769 Lan-Chr10 10343816 10349857 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan10g0769 BTB 2.7e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0769 K10523 - gmx:100809683 802.357