Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0750 ATGGAAATTCAATTCCAGCAACCAAAGCTGCAGCATCAGAAACCTAGCATTTCAGTGATTAACAACAAAGTAGGCAAATTCAAAGGAAGAAGCAGAAACAACAACAACACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACTTTTGAGACAGCTGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCGTGCCTTCTTCGCGGATCGAATACTCGAACAAACTTCATCACTCATGTTTCAATGGATTCTCCCATTGCTTTTCGGATTCGAAATCTTCTTAAAGAAAGAAAAGGTGTCAAAGAAAAACAAGAAGATATTGTTGATGTTGGCACCAACATTAGCAGTGCTAGCCCTAATACTAATTCATGCAATAATAACAATGACAAGAATGCTAGCTCTATTTCTAGTGTGACAACTCCAAACAGCACAAAGCTTTTTGATGATGATTTTGAATCTGATTTTAGCAATTGTAGGGTGGAATCTGAGTCCAATTTCTCATGGGCTTTTGGGCAAGTCTTTGATTGTTTTCCTTTTGCTCAAATGTTGGATATACCAAAGATTGATGGCATGATTGATACACAACATTTGGAGCTATCAGAATTTGAAAGGATGAGAGTTGAAAGACAAATATCAGCATCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAGCTGTTAAGGACTCCAATGAATCTCTTTGGGATCTTCCACCAATATGCTCATTGTTCTATTCAACTTAA 804 0.3831 MEIQFQQPKLQHQKPSISVINNKVGKFKGRSRNNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSMDSPIAFRIRNLLKERKGVKEKQEDIVDVGTNISSASPNTNSCNNNNDKNASSISSVTTPNSTKLFDDDFESDFSNCRVESESNFSWAFGQVFDCFPFAQMLDIPKIDGMIDTQHLELSEFERMRVERQISASLYAINGVHEYMEAVKDSNESLWDLPPICSLFYST* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0750 267 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lan10g0750 267 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Lan10g0750 267 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 14 252 - -
Lan10g0750 267 MobiDBLite consensus disorder prediction 131 158 - -
Lan10g0750 267 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Lan10g0750 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0750 Lan-Chr10 9711647 9712552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0750 26 267 AP2-EREBP Transcription Factor Family AT5G19790 42.146 1.87e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan10g0750 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0750 K09286 - gmx:100796898 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0750 10 9711647 9712552 Lan20g1466 20 21373277 21376244 PCT
Lan20g1466 20 21373277 21376244 Lan10g0750 10 9711647 9712552 PCT