Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0667 ATGAGTTTCTTTGATGAACTACAAGGTCATGACTCAACCTCAAACCTCAATGGCAAGGGTCACAATAATGGCTTCAATAAAAAGATATTGCTCGCAGCCATAATTTTCTTATCAATAGTCTTAGTTTTGGTTTTTGCACTTCATCTCTATGCAAGGTTTGTTCTACGGCGCCAAGCGCGTCGTAGAGCGGCCATTCACCATCTTAGTCTCACTGTGGCACATGTTCATGCCCAAACAAGTGAACCACACAACACAGGACTCGACCCTTTAGTCATCAAGGCTCTTCCCATGTTCATCTTCAAGAGAAAAGGAGAAGACCAAGATTATGATGAGTGTGCCGTGTGTTTGAGTGCTTTAGAGAATGAAGAAATGGTGAGATTGTTACCAAATTGTAAGCACACTTTCCATATTGATTGCATTGATACATGGTTAGCTTCGCACTCTACATGTCCAATTTGTAGAACCAAGGCTGAACCGCGGCTCGAACCGCAGCCGCGTGAGGGTCCTAATGGCTTGGTTGAACCCATAGAAGGTACATCAGATGGTACTACTGTATGTGGGTCACCCAAAATCAATGGTTCTAATTCAAGATTTAGTTCATTCCGAAGGATTCTTAGTAGGGAAAGATCATCTAGGAGAATTCAACCTTCTAGCCATGACGATATTGATCGTGATTTAGAGAGACAAGGATAA 693 0.4242 MSFFDELQGHDSTSNLNGKGHNNGFNKKILLAAIIFLSIVLVLVFALHLYARFVLRRQARRRAAIHHLSLTVAHVHAQTSEPHNTGLDPLVIKALPMFIFKRKGEDQDYDECAVCLSALENEEMVRLLPNCKHTFHIDCIDTWLASHSTCPICRTKAEPRLEPQPREGPNGLVEPIEGTSDGTTVCGSPKINGSNSRFSSFRRILSRERSSRRIQPSSHDDIDRDLERQG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0667 230 MobiDBLite consensus disorder prediction 160 230 - -
Lan10g0667 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 160 IPR013083 -
Lan10g0667 230 SUPERFAMILY RING/U-box 91 164 - -
Lan10g0667 230 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 20 229 - -
Lan10g0667 230 PANTHER RING FINGER DOMAIN-CONTAINING 20 229 - -
Lan10g0667 230 SMART ring_2 112 153 IPR001841 -
Lan10g0667 230 CDD RING-H2_PA-TM-RING 111 154 - -
Lan10g0667 230 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lan10g0667 230 MobiDBLite consensus disorder prediction 202 230 - -
Lan10g0667 230 MobiDBLite consensus disorder prediction 181 201 - -
Lan10g0667 230 Pfam Ring finger domain 110 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0667 Lan-Chr10 6404639 6405928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0667 25 229 C3H Transcription Factor Family AT2G42360 48.402 3.33e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0667 K19038 - gmx:100780265 255.373