Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0655 ATGTTCTCTTCTTCTTCCTCATCCTTCTCTAGCTACACCTTATATACACTGTTCTTCACGTTTCAAGCAAAATTTCTTATACCAAAAGCTACAAAACCTAGATTCCCCATGTTAGTCAATAATAACTTATCATCACATCCTTCATCTGACCCATTTTCATGCAGTGACAATGGTACTGCTTCTTCTAATAAAAGGAGGAGAAGACCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCACTATCACCAAAGACATTACTTGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAAGTGCCGTGGAAGTTGCTGAAAAGGGAGACACCAGTGGTGAAAAAGAGAGTGTTTGTGTGTCCTGAACCTTCTTGCTTGCACCATGACCCTTGTCATGCACTTGGTGACCTTGTTGGGATCAAAAAACACTTCAGAAGGAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCCAAAGGGTATGCAGTGCAATCTGATTACAAAGCACACCTCAAAACTTGTGGCACTAGAGGCCACTCTTGTGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAAAATGGGGAGTATAAGGCAAGAACCACAGCCACTACAAGGTGCATGCTTCTCTCGAACCGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACTGCTCCATGGCCACCACCCTCTCTAGTCATACCAAAGAACCCTCTTGTTGTAATAGCAACACAGAACAGACAAACATTCTTGAACCCTACAACTACTACTACTACTACCATTGTTGCAAGTAATGCTGAAACATCATCCAAGAACAATAACAACAAACTCATCTACCCCAACTTGGATCTTCAACTCTCCACAGCAACACCAACATCTATTAATCATGTAGTTGCTGCTCCAATATCTTTATCATCACCTAAGAATATAGATGGCAATGGATTGCAACTTTCCATTGGTTCATCTGAAATAAGTGACAAAAGTACTGAATCAAACAACAGTACCGAAGGTGCACATGCACGTGAGCAGGCACATGAGGAGTTGAGGATAGCAATGGCGGAGAAGGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGGCGCAGATTGAACTAGCTGAACTTGAGTTCACAAATGCTAAGAGGATTCGACAACAAGCACAAGCTGAACTGAACAAAGCTTATAGTTTGAAACAACATGCAATCAAACAAATCAATGCAGCCATGCTTCAAATCACTTGCCATTCTTGCAAGCAACAGTTTCAAGCGCTAAGTAATGAAGGTGGCCAAGAAGAGAAGAATGGTAATGGAAAATATCTTACCAAAACCTCTAACTCTTAA 1422 0.4262 MFSSSSSSFSSYTLYTLFFTFQAKFLIPKATKPRFPMLVNNNLSSHPSSDPFSCSDNGTASSNKRRRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACKMGSIRQEPQPLQGACFSRTASSPSPSSETNFSTAPWPPPSLVIPKNPLVVIATQNRQTFLNPTTTTTTTIVASNAETSSKNNNNKLIYPNLDLQLSTATPTSINHVVAAPISLSSPKNIDGNGLQLSIGSSEISDKSTESNNSTEGAHAREQAHEELRIAMAEKAYAEEARKQAKAQIELAELEFTNAKRIRQQAQAELNKAYSLKQHAIKQINAAMLQITCHSCKQQFQALSNEGGQEEKNGNGKYLTKTSNS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0655 473 PANTHER OS03G0310200 PROTEIN 39 460 IPR039288 GO:0009630
Lan10g0655 473 MobiDBLite consensus disorder prediction 345 366 - -
Lan10g0655 473 Gene3D Classic Zinc Finger 155 230 - -
Lan10g0655 473 Coils Coil 376 417 - -
Lan10g0655 473 MobiDBLite consensus disorder prediction 345 370 - -
Lan10g0655 473 MobiDBLite consensus disorder prediction 45 60 - -
Lan10g0655 473 SUPERFAMILY beta-beta-alpha zinc fingers 90 116 IPR036236 -
Lan10g0655 473 SMART c2h2final6 93 115 IPR013087 -
Lan10g0655 473 SMART c2h2final6 170 197 IPR013087 -
Lan10g0655 473 SMART c2h2final6 134 164 IPR013087 -
Lan10g0655 473 MobiDBLite consensus disorder prediction 452 473 - -
Lan10g0655 473 Pfam Zinc finger, C2H2 type 93 115 IPR013087 -
Lan10g0655 473 MobiDBLite consensus disorder prediction 45 80 - -
Lan10g0655 473 MobiDBLite consensus disorder prediction 233 255 - -
Lan10g0655 473 Gene3D Classic Zinc Finger 71 134 - -
Lan10g0655 473 MobiDBLite consensus disorder prediction 233 257 - -
Lan10g0655 473 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 39 460 - -
Lan10g0655 473 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lan10g0655 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0655 Lan-Chr10 6221028 6224456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0655 56 452 C2H2 Transcription Factor Family AT2G01940 54.567 3.69e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan10g0655 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0655 K25871 - gmx:100800187 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0655 10 6221028 6224456 Lan3g0384 3 2859864 2862729 LSH