Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0640 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTTAAGAGAGGACCATGGTCTCCTGAAGAAGATGCAACACTCAAAAGTTATCTACAGATTCATGGCACTGGTGGAAATTGGATTGCATTGCCTACAAAAGCTGGCCTTAGGAGATGTGGCAAAAGTTGTCGTCTAAGGTGGCTCAATTATCTTAGGCCAGATATCAAACATGGTGGCTTTACTGAAGAAGAGGACAACATCATTTGCACCCTCTATGTTCAAATGGGAAGCAAATGGTCAGCTATAGCATCTCAACTTCCAGGGAGAACAGATAATGATGTGAAAAACTATTGGAACACAAAACTAAAGAGGAAGCTTATGGCAGGAAAAGTGTGCCACAAAAAATTGAATGATAATGACACTCTTCCTTCAACAACATTACTAACCCAAAAGGCTCAAAGTTTGGACTTTCATGCTTCACAGAATCAAAATTCTATGCCAAACTTAAGCACGGATGCTTGTTCCGAATTTAACATTGATGAAAAAAACATGGGTTTTGGCCTAATTCATCAGTTCTATAGTCCACAGGTTAAGGATGTTGTCAAAGAAGTTGGTGCAAGTTCAAGGAACAATAACCATAATCATAACCCTTTGATGTCATTGTCTCAAGAAGGTTCAAGCATTTCAGATTCATCTTCCATTGCAGTGGAAAATAATTGTGTATTGCTGCCAGAACATGCTGGTAATCATGAATCTGCAGAGCAAGTGTTGATGGATTTTGGGTTTGAATTTCCTTATGATCTTACCAATAATCTTAATTGCCATGAGAGATTTGGTGAATTTTCTCCAAGTGGGTATTCTGAGTGGGTTGATTTTAGCTATGTTGACATTAAGCCACATTTACTTAACAAAAATTAA 891 0.3816 MGRAPCCDKANVKRGPWSPEEDATLKSYLQIHGTGGNWIALPTKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYVQMGSKWSAIASQLPGRTDNDVKNYWNTKLKRKLMAGKVCHKKLNDNDTLPSTTLLTQKAQSLDFHASQNQNSMPNLSTDACSEFNIDEKNMGFGLIHQFYSPQVKDVVKEVGASSRNNNHNHNPLMSLSQEGSSISDSSSIAVENNCVLLPEHAGNHESAEQVLMDFGFEFPYDLTNNLNCHERFGEFSPSGYSEWVDFSYVDIKPHLLNKN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0640 296 CDD SANT 71 113 IPR001005 -
Lan10g0640 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan10g0640 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan10g0640 296 CDD SANT 16 62 IPR001005 -
Lan10g0640 296 Gene3D - 70 145 - -
Lan10g0640 296 SMART sant 13 64 IPR001005 -
Lan10g0640 296 SMART sant 67 115 IPR001005 -
Lan10g0640 296 PANTHER OS09G0431300 PROTEIN 1 222 - -
Lan10g0640 296 PANTHER OS09G0431300 PROTEIN 1 222 - -
Lan10g0640 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan10g0640 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan10g0640 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan10g0640 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan10g0640 296 Gene3D - 7 68 - -
Lan10g0640 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0640 Lan-Chr10 5998845 6001354 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0640 1 254 MYB Transcription Factor Family AT4G37780 47.126 1.46e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0640 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0640 K09422 - gmx:100817747 393.275