LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan10g0639	ATGATGGAGGAATACACTAATACTAGTAATCACATGAGTGAAAACACAGGTCCTAGTTCAAGTCCAAGGCCAAATTTCTTGTACTCTTCTTTGGCTAGTGGTTCAAGCCTTGAAAATCATCATCATCAATTTTCAATCAACAACTTTCATCTTCAATCTGATAGTGGATCAGATCATCATCATCACTGTTTTCTATACGATCAATTACCACCACAATCTGCTGTGAAAAGTGAAGCTCCTAATTCTACTACATCTCAGCTTTTCACTCCGATTTTCAACTATCCTTTGATGAGAGGAAATTTTCAGAAAAACACTATGCAGCAGTACCAAGGAGGGAGCCAAAGTTTTAATGAAGTTGAAGACATAAAAGCTAAAATCATTGCTCATCCTCAGTACTCCAATCTCATTGAAGCTTACCTTGATTGTCAAAAGGTTGGAGCTTCTTCGGAAGTGGTGACGCGTCTGGTTGAGACGAGGCAAGAGTTTGAGGCACGGCAACGATCTTCACTTAACTCAAGGGAAAATTCAAAGGACCCAGAACTTGACCAATTTATGGAAGCATATTATGGCATGCTAGTGAAGTATAGAGAGGAATTAACAAGGCCAGTACAAGAGGCAATGCATTTCATGAGGAAGATAGAAACTCAGCTTAATTTGCTTTGCAATGGACCCGTGTGGATCTTCTCTGGTATTGGTTCATCGGAAGAGGATCAAGACAATAATAGTGGTGGAGAAACAGAATTGCCCGAGTTTGATCCCAGATCAGAAGACCGTGAACTTAAAAATCACTTGCTGAAGAAGTATAGTGGTTATTTGAGTAGCCTTAAGCAAGAACTTTCAAAGAAAAAGAAGAAGGGAAAGTTGCCTAAAGATGCTAGGCAGAAGCTACTTAACTGGTGGGAATTGCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCACTGTCAGAGTCAACTGGTTTGGACCAGAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCATCTGAAGATATGCAATTTATGGTAATGGATGGCCTGAATCCCCAGAATGGCACAACTCTTTATATGGATGATGTATACATGGGTGATGGTCACTATCGTCTAGCACCATGA	1137	0.4019	MMEEYTNTSNHMSENTGPSSSPRPNFLYSSLASGSSLENHHHQFSINNFHLQSDSGSDHHHHCFLYDQLPPQSAVKSEAPNSTTSQLFTPIFNYPLMRGNFQKNTMQQYQGGSQSFNEVEDIKAKIIAHPQYSNLIEAYLDCQKVGASSEVVTRLVETRQEFEARQRSSLNSRENSKDPELDQFMEAYYGMLVKYREELTRPVQEAMHFMRKIETQLNLLCNGPVWIFSGIGSSEEDQDNNSGGETELPEFDPRSEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALSESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLNPQNGTTLYMDDVYMGDGHYRLAP*	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan10g0639	378	MobiDBLite	consensus disorder prediction	232	255	-	-
	Lan10g0639	378	Pfam	Homeobox KN domain	299	338	IPR008422	GO:0003677\|GO:0006355
	Lan10g0639	378	SUPERFAMILY	Homeodomain-like	280	353	IPR009057	-
	Lan10g0639	378	CDD	homeodomain	291	343	IPR001356	GO:0003677
	Lan10g0639	378	ProSitePatterns	'Homeobox' domain signature.	317	340	IPR017970	GO:0000981\|GO:0006355
	Lan10g0639	378	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 1	2	370	-	-
	Lan10g0639	378	SMART	KNOX1_2	120	164	IPR005540	GO:0003677\|GO:0005634
	Lan10g0639	378	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	2	370	-	-
	Lan10g0639	378	Pfam	ELK domain	259	280	IPR005539	GO:0003677
	Lan10g0639	378	SMART	KNOX2_2	171	222	IPR005541	GO:0003677\|GO:0005634
	Lan10g0639	378	Pfam	KNOX2 domain	176	221	IPR005541	GO:0003677\|GO:0005634
	Lan10g0639	378	Gene3D	-	284	346	-	-
	Lan10g0639	378	Pfam	KNOX1 domain	122	163	IPR005540	GO:0003677\|GO:0005634
	Lan10g0639	378	SMART	HOX_1	281	346	IPR001356	GO:0003677
	Lan10g0639	378	ProSiteProfiles	ELK domain profile.	259	279	IPR005539	GO:0003677
	Lan10g0639	378	SMART	ELK_2	180	200	IPR005539	GO:0003677
	Lan10g0639	378	SMART	ELK_2	259	280	IPR005539	GO:0003677
	Lan10g0639	378	ProSiteProfiles	'Homeobox' domain profile.	279	342	IPR001356	GO:0003677
	Lan10g0639	378	MobiDBLite	consensus disorder prediction	1	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan10g0639	Lan-Chr10	5930055	5935893	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan10g0639	63	378	Homeobox Transcription Factor Family	AT4G08150	65.549	2.98e-139	400

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Lan10g0639		KNOX2	2.2e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan10g0639	-		-	gmx:100800822	546.969