Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0593 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCACACTCCAGCAACAATATTAACAGTGATGCCGGCAATTTCGAATGCAACATTTGCTTTGACTTAGCACAAGACCCTATAGTCACTTTATGTGGTCATCTCTTCTGCTGGCCTTGTCTTTACAGATGGCTTCACTTCCATTCAAAGTCACGAGAATGCCCAGTGTGCAAGGCCCTCGTCGAGGAGGAAAAGTTGGTTCCCTTATATGGGAGAGGAAAGACATCAACTGACCCGAGATCAAAATCTATTCCGGGTGTTAATATCCCGCATCGTCCTGCTGGTCAGAGGCCCGAAACAGCTCCTCCACCTGAGCCTAATGCTTTTCCTCAACCTGGCTTTGGATTCACAGGCGGGTTGGGAGGGTTTGCACCGATGGCAACTGCAAGATTTGGGAATTTCACATTGGCTGCAGCAATTGGTGGTTTTCTTCCATCCTTAATTAACTTTCCGTTGCAGGGGTTTCATGATAGTGCTATCACTGCCATGTATGGAGGAGCAACTGGTTTTCCATATGGGTTTTCGAATTCATTTCATGGTGTTGGCCATTTTCATAGATATCCTCCCCAAAGAGTACAAGGCCAGCAAGATTACTATCTGAAGAGGCTGCTAATGATTGTTATTTTTTTTGTCGTACTTGCTTTGATTTGGCAATAG 702 0.4601 MASGFGESTSRSPPSPSHSSNNINSDAGNFECNICFDLAQDPIVTLCGHLFCWPCLYRWLHFHSKSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPEPNAFPQPGFGFTGGLGGFAPMATARFGNFTLAAAIGGFLPSLINFPLQGFHDSAITAMYGGATGFPYGFSNSFHGVGHFHRYPPQRVQGQQDYYLKRLLMIVIFFVVLALIWQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0593 233 SMART ring_2 32 72 IPR001841 -
Lan10g0593 233 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lan10g0593 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan10g0593 233 SUPERFAMILY RING/U-box 28 85 - -
Lan10g0593 233 CDD RING-HC_AtRMA_like 30 74 - -
Lan10g0593 233 Pfam Zinc finger, C3HC4 type (RING finger) 31 72 - -
Lan10g0593 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Lan10g0593 233 MobiDBLite consensus disorder prediction 1 22 - -
Lan10g0593 233 MobiDBLite consensus disorder prediction 86 122 - -
Lan10g0593 233 PANTHER OS12G0636000 PROTEIN 2 233 - -
Lan10g0593 233 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0593 Lan-Chr10 5123622 5125600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0593 30 216 C3H Transcription Factor Family AT1G19310 64.249 8.53e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0593 K10666 - gmx:100527488 348.977