LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan10g0505	ATGATGACACAGGAAACAGCACCATCCTTGTCTTCCTTCACATGTCAATGGACTTATGATGTTTTCCTCAGTTTTAGAGGAGAAGATACTCGCCATGAGTTCACAAGTAATCTCTATAATTCTCTGCATCAAAAGGGAATCCAAACTTTCATTGACAATGAAGGGCTTAGAAGAGGGGAAGAAATTACACCTGCACTTCTCAAAGCCATTCAAGAATCCAGGATTGCTATTATTATCTTCTCTAAGAACTATGCTTCCTCAACATATTGTTTGGATGAACTTGTCAAGATCATCCAGTGCTCAAAGGTACAAAGTCGACTGGTTTGGCCTGTTTTTTATGATGTCGATCCATCGCAAGTTCGGAAGCAGAATGGAACTTATGCAGAAGCTTTTGAAAAACATGAGGAAATTTTCGAGGATGACAAGGTAGAACAATGGAAGAAGGCTTTATATCAAGCAGCAAATTTGTCTGGCTGGCATTTCCAACATGGGTCTGAACCAGAATATAAGTTTATTGGAAAGATCGTCAAGCAGGTCTCGGAAAAGATCAATCGCATTCCTTTACATGTTGCGGATAATCCAGTTGGGCTAGAGTTTCCGGTGTTAGAAGTGACATCCCTCATAGGACTTGAGTCTAATGTCAATATGGTAGGGATTTATGGTATTGGTGGAATCGGCAAAACAACAATTGCTCGTGCTGTGTATAACTTGATTTCTGATCAATATGAAGGTTTGTGTTTTCTTTCTGACATAAGAGAAAATGCAATTAATAAGCATGGCCTTGTGCAGCTCCAAGAAACACTACTTTCTGAAATACTTGGCGAGAATGACATCAAAGTAGGTGATGTCAATAGAGGAATTCCAATAATAAAAAGGAGGCTTCAACAAAAGAAGATTCTTTTGATTTTAGATGATGTTGATAAAATGGTGCAGTTAAAGGTATTGGCCGGAGGATATGATTGGTTTGGCCGCGGCAGCAAAATCATTATCACAACAAGAGACAAACAATTGCTTGTCACTCATGGGATAACAAGTTTATATGAAGTTAAACATCTAATGGATGAAAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAAAGTAGAAAAGTTGATGCAAGTTATGCGGATATTTCAAACCGTGCTGTTTTATATGCTTGTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCTCACTTATTTGGTAAAAGTTTACATGAATGTTATTCTGCATTAGATAAGTATGAAAAATTTCCTCATAGAGATATCCATGAAATACTTAAAGTAAGCTTTGATGGTTTGGATGAAGATGAAAAGGGAATTTTCCTTGATATAGCTTGTTTCTTCAATACTTTCAAAATGGACTATGTCAAAGAAATGCTACGCGCTCATAGTTTTCATGCAGAAAATGGCATTCGAGTTTTGGCTGACAAATCTCTCATAAAGATTAGTGATCACGATTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTAAGGCAAGAATCAGCACTTGATCCGGGAAAACGCAGTAGGCTATGGTTTGATGCAGACATCATTCATGTTTTAGAAGAAAATACGGGGACTGATAAAATTGAAGTCATAATGCTTGACGAATGCAACAAAGAAGTGCAGTGGAGTGGAAAAGCCTTCAAAAAGATGAAAAACCTTAGGATTCTGATTATTGGAGATGCAATATTTTCTACAGGCCCTCAATATCTACCAAATAGTTTGAGAGTGATAGATTGGAGTTATTATCCATCACCTTCTTTACCACCGACTTTCATTCCGAAAGAACTTATGATACTCAAGCTGCCAGAAAGTTGCCTTCAATTCTTCCAACCACTCAAGAAGTTTGAACTCTTGTGGTTAATAAATTTTGAAGATTGCAAATTCTTAACTGAACTACCTAGCTTACGTGAAGCACCACTCCTAAGGCGTCTGTGTCTCGACAATTGCACTAAGCTACTTAGAATTGATGAGTCAGTTGGTTTTCTTGATAATCTCTTTTACTTGAGTGCTAAAGGATGCACTCAGCTAGAAATTCTGGTACCCTGCATCAAGTTGAAAGCACTCGAGGTTCTGGATCTTGCATGGTGCTCAAGTCTTAAGTGCTTCCCCGAAGTATTGGAAAAGATGGATAAAATAAGAGTTATTCATTTAGATGATACTGACATAAACAAGTTGCCATTTTCAATTGGAAATTTGGTTGGACTTGAACGCTTGTACCTTAGGGGATGTAAGTTGTTGAAGCAGCTACCTAATACTATCCACTCATTGCCTAAAGTTGAAGTGATAGTAGGTTATCCGAGTAAACGATTTCGGTTTTTCGATAAAGAAAAAGTTTGCTCGGAATCAGAAATATCTCCAACAGCCATGGTTGTTTATAATAGAGGCCAAGGTTTCACCCACCTAGATGTATATTCTGAGTGCTTAAGCAGCAACATTTTCATCCAATTATGTACTCCAAATAGGCTTCAGGATCCTCATTCTGAGTTGTTGTTCGAAGCGCTTAATAGGAACACTGTCACAACTGAGATGGAAGAATCAATACATTTCTGGTTTCTGAAAAAATTCCCTAAGATAACTCTATGTTGTGCTAGAGAACCTGACACATATGTAAATGATAATCTGGTTTTATATTTCAAGTTGAATGTAGTCATCAATGGCACTACACAATTCAGTTCTTCATGTACCTACATTAATACAGGGGACCCTATATATTTGACCCAAGTATTTTTGTGTGATCTAGAATGCAAATCAGAGGGGGTATTTTCAGAGCATGAGTGGAATCAAGTTGAGATTTTTTGTGAGTTTGAGTACCCCAAACCATGTGATTATGAAAGAGAAATGACAGCAGAGTTAAGGAACATAAAAGGATGTGTACAGACCAACATTTATGTAGACAAGGAAGGAAACTGCATGGAGAATATTAAATTCAATAATCCTATGATTGATGAACCTCTCTCTTTCTCTTTCTCTTCCTCTTCTGAATGTATTGAATCTCCCTTGTCCTTCTTTTAG	3036	0.3752	MMTQETAPSLSSFTCQWTYDVFLSFRGEDTRHEFTSNLYNSLHQKGIQTFIDNEGLRRGEEITPALLKAIQESRIAIIIFSKNYASSTYCLDELVKIIQCSKVQSRLVWPVFYDVDPSQVRKQNGTYAEAFEKHEEIFEDDKVEQWKKALYQAANLSGWHFQHGSEPEYKFIGKIVKQVSEKINRIPLHVADNPVGLEFPVLEVTSLIGLESNVNMVGIYGIGGIGKTTIARAVYNLISDQYEGLCFLSDIRENAINKHGLVQLQETLLSEILGENDIKVGDVNRGIPIIKRRLQQKKILLILDDVDKMVQLKVLAGGYDWFGRGSKIIITTRDKQLLVTHGITSLYEVKHLMDEKALELFSWHAFKSRKVDASYADISNRAVLYACGLPLALEVIGSHLFGKSLHECYSALDKYEKFPHRDIHEILKVSFDGLDEDEKGIFLDIACFFNTFKMDYVKEMLRAHSFHAENGIRVLADKSLIKISDHDCVRMHDLIQDMGREIVRQESALDPGKRSRLWFDADIIHVLEENTGTDKIEVIMLDECNKEVQWSGKAFKKMKNLRILIIGDAIFSTGPQYLPNSLRVIDWSYYPSPSLPPTFIPKELMILKLPESCLQFFQPLKKFELLWLINFEDCKFLTELPSLREAPLLRRLCLDNCTKLLRIDESVGFLDNLFYLSAKGCTQLEILVPCIKLKALEVLDLAWCSSLKCFPEVLEKMDKIRVIHLDDTDINKLPFSIGNLVGLERLYLRGCKLLKQLPNTIHSLPKVEVIVGYPSKRFRFFDKEKVCSESEISPTAMVVYNRGQGFTHLDVYSECLSSNIFIQLCTPNRLQDPHSELLFEALNRNTVTTEMEESIHFWFLKKFPKITLCCAREPDTYVNDNLVLYFKLNVVINGTTQFSSSCTYINTGDPIYLTQVFLCDLECKSEGVFSEHEWNQVEIFCEFEYPKPCDYEREMTAELRNIKGCVQTNIYVDKEGNCMENIKFNNPMIDEPLSFSFSSSSECIESPLSFF*	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan10g0505	1011	Gene3D	-	351	435	IPR042197	-
	Lan10g0505	1011	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	685	IPR044974	GO:0006952
	Lan10g0505	1011	SUPERFAMILY	"Winged helix" DNA-binding domain	422	528	IPR036390	-
	Lan10g0505	1011	Pfam	TIR domain	19	186	IPR000157	GO:0007165
	Lan10g0505	1011	Gene3D	-	15	187	IPR035897	-
	Lan10g0505	1011	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	685	-	-
	Lan10g0505	1011	SUPERFAMILY	L domain-like	544	770	-	-
	Lan10g0505	1011	Gene3D	-	196	343	IPR027417	-
	Lan10g0505	1011	Gene3D	Ribonuclease Inhibitor	691	780	IPR032675	-
	Lan10g0505	1011	Gene3D	Ribonuclease Inhibitor	535	690	IPR032675	-
	Lan10g0505	1011	Pfam	NB-ARC domain	213	409	IPR002182	GO:0043531
	Lan10g0505	1011	ProSiteProfiles	TIR domain profile.	17	183	IPR000157	GO:0007165
	Lan10g0505	1011	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	159	IPR035897	-
	Lan10g0505	1011	PRINTS	Disease resistance protein signature	216	231	-	-
	Lan10g0505	1011	PRINTS	Disease resistance protein signature	293	307	-	-
	Lan10g0505	1011	PRINTS	Disease resistance protein signature	386	400	-	-
	Lan10g0505	1011	PRINTS	Disease resistance protein signature	691	707	-	-
	Lan10g0505	1011	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	445	IPR027417	-
	Lan10g0505	1011	SMART	till_3	18	156	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan10g0505	Lan-Chr10	3938576	3942386	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan10g0505	13	770	WRKY Transcription Factor Family	AT4G12020	34.221	2.26e-104	357

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan10g0505	-		-	gmx:100802408	1291.17