Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0480 ATGGTGAGGAAGAGGAGAACTGAAGGATCCAGTGGGGTGGAAAGTTCTGAGCATCAACAACACCCTGCTGAAAGGAGTGCCCCACCCCCTCAACCATTTGCCTCTCCAGCTGGAGTGGCAGGAGGACCCCAAGGAGGACGCGGGGGTTATGCACCTCAAGGAGGACGTGGGGGTGGTTATGGCGGGCGTGGTCGTGGGAATTCCCAACAACCATATGGTGGTCCCCCGGATTATCAACAAGGTAGAGGAAGAGGTGGGCCTCCTCAGCAAGGTGGTCGTGGTGGAGGATATGGTGGTGGACGCAGTGAATATGGTGGTGGTAGCCGCGGTGGTGGTGGGTATGCTGGTGGTGGCGGTGGCCGAGGTGGTGGTATGGGAAGTGGCCGTGGTGTAGGACCTGGAACTTCATTCGATGGCCCATCCAGACCACCTTACCCCGAGCTGCACCAAGCAACCCCAGTTCCATACCAAGCTGGGGTGACTCCTCAGTCTACACCAGCTGAGGCAGGATCTTCTTCGCAGGCACCTGAGCCTTTACCAGTGGAACAGCAAATGGAGCAGCTATCCATTCAATTAGAAGCTGATGATGTTCCTGCTTCCCCTCCGGTTGCTCCCCCTGCCAGCAAGTCATCAATTAGGTTTCCCCTCCGTCCTGGGAAGGGTACATTTGGCCATAAGTGTATTGTCAAGGCCAATCACTTCTTTGCTGAGCTGCCCAATAAAGATTTGCATCAATATGATGTCACAATTAGTCCAGAAGTGATTTCAAGAGGTGTGAACCGAGCTGTGATGGAGCAACTTGTGAAACTCTATCGTGAATCTCATCTTGGAAAGAGACTCCCTGCTTATGATGGCCGCAAGAGCCTTTACACTGCTGGCCCGCTTCCTTTTGTGTCAAGGGAGTTTCGAGTCTCTCTTATTGATGAAGATGATGGATCAGGAGCCCAGAGGAGGGAAAGGGAGTTCAAAGTTGTGATAAAAATGGCTGCACGGGCAGACCTTCATCATTTAGGACTCTTTCTGCAGGGAAGGCAAACTGATGCTCCACAAGAAGCTCTGCAAGTTCTTGACATTGTTCTGCGTGAACTCCCTACGAGCAGGTATTGTCCAGTAGGAAGATCATTTTATTCCCCCGATCTTGGTAGGAGGCAGCCGTTAGGTGAGGGTTTGGAAAGTTGGCGTGGTTTCTATCAAAGTATCCGTCCCACTCAGATGGGGCTGTCTCTGAACATTGATATGTCCTCCACTGCATTTATTGAGCCATTGCCTGTAATCGATTTTGTAACTCAACTGCTGAACAGGGATGTCTCTCAGCGACCACTGTCTGATTCTGATCGTGTGAAGATAAAAAAGGCACTCCGGGGCATAAGAGTTGAAGTAACACATCGTGGAAACATGAGAAGAAAATATCGTATCTCAGGTCTTACCTCACAGGCTACAAGAGAGCTGACGTTCCCGGTGGATGAGATGGGAACAATGAAATCTGTTGTGGAATATTTCTTTGAGACTTATGGTTTTATCATAAAGCATACCCAGTGGCCTTGTCTGCAAGTAGGCAATACACAGAGGCCAAACTATTTGCCAATGGAGGTTTGCAAGATTGTAGAAGGTCAAAGGTACTCAAAGAGGCTGAATGAGCGGCAGATTACTGCATTGCTCAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATTATGCAGACTGTACATCATAATGCCTACCATGAGGACCCATATGCCAAAGAGTTTGGAATTAAAATAAGTGAAAAACTTGCCCATGTTGAAGCTCGCATCCTCCCTCCACCTCGGCTCAAATATCATGATACAGGTAGAGAAAAAGATTGCTTGCCTCAGGTTGGCCAATGGAACATGATGAATAAGAAAATGGTCAACGGGGGGACAGTCAATCACTGGTTCTGCATAAATTTTGCAAGGAACGTTCAAGATAGTGTTGCCCGTGGTTTTTGTTTTGAACTTGCCCAGATGTGTCAAATATCTGGCATGGCATTCAATCCAGACCCAGTAGTTCCTGCACTCAGTGCTCGCCCTGACCAAGTTGAAAAAGTTCTGAAAAATAGGCATTCTGATGCTAAGAGCAGATTGAAGGGGCAGGATCTTGATCTGCTCATTGTTATTTTGCCTGATAACAATGGCTCTCTTTATGGTGACCTCAAACGTATATGTGAGACAGATCTTGGGGTTGTTTCCCAATGTTGTTTAACAAAGCACGTATTTAAAATGAGCAAGCAGTATCTTGCAAATGTTGCTTTGAAAATTAATGTCAAGGTTGGAGGAAGGAACACTGTGCTTGTTGATGCGCTTTCACGACGCATACCCTTGGTTAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTGACTCATCCACATCCCGGAGAGGATTCTAGTCCTTCGATTGCAGCTGTTGTTGCTTCTCAAGACTGGCCTGAAATTACCAAGTATGCTGGTCTGGTTTGTGCCCAAGCACATAGGCAAGAGCTTATCCAGGATCTATTTAAGCAGTGGCAAGATCCTGTCAGAGGGACTGTGACTGGAGGAATGGTCAAGGAACTTCTCATATCTTTCCGTAGGGCTACAGGGCAAAAGCCAACCCGTATCATATTTTACAGGGATGGTGTTAGCGAGGGCCAGTTTTATCAGGTGTTATTGTTTGAGCTTGATGCTATTCGGAAGGCTTGTGCATCCCTTGAGCCTAACTATCAGCCACCTGTTACTTTTGTGGTGGTTCAGAAGCGCCATCATACAAGGCTCTTTGCGAGCAATCATAACGACAGAGGTTCTGTAGATAGGAGTGGGAATATATTACCTGGAACTGTGGTAGACTCCAAAATCTGTCATCCCACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGAATACAGGGTACCAGCCGTCCTGCTCATTACCATGTACTGTGGGACGAGAATAATTTTTCTGCTGATGGATTACAGACTCTAACCAACAACCTCTGCTACACTTATGCAAGGTGTACACGCTCTGTTTCAATTGTGCCTCCTGCCTATTATGCTCATCTTGCTGCGTTTCGAGCTCGGTTCTACATGGAACCTGATACTTCTGACAGTGGATCAATGGCAAGTGGTGCTTATGCTGCTGGTCGTGGAATGGGTGGCAGTGCAAATCGCAGCACTCGGGCACCTGGTGTCAATGCTGCTGTGAGGCCTCTTCCTGCATTGAGGGATAATGTGAAGAAGGTCATGTTTTACTGCTAA 3258 0.477 MVRKRRTEGSSGVESSEHQQHPAERSAPPPQPFASPAGVAGGPQGGRGGYAPQGGRGGGYGGRGRGNSQQPYGGPPDYQQGRGRGGPPQQGGRGGGYGGGRSEYGGGSRGGGGYAGGGGGRGGGMGSGRGVGPGTSFDGPSRPPYPELHQATPVPYQAGVTPQSTPAEAGSSSQAPEPLPVEQQMEQLSIQLEADDVPASPPVAPPASKSSIRFPLRPGKGTFGHKCIVKANHFFAELPNKDLHQYDVTISPEVISRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVSREFRVSLIDEDDGSGAQRREREFKVVIKMAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSQRPLSDSDRVKIKKALRGIRVEVTHRGNMRRKYRISGLTSQATRELTFPVDEMGTMKSVVEYFFETYGFIIKHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAHVEARILPPPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFARNVQDSVARGFCFELAQMCQISGMAFNPDPVVPALSARPDQVEKVLKNRHSDAKSRLKGQDLDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMVKELLISFRRATGQKPTRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHNDRGSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAYAAGRGMGGSANRSTRAPGVNAAVRPLPALRDNVKKVMFYC* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0480 1085 Gene3D - 600 773 - -
Lan10g0480 1085 Pfam N-terminal domain of argonaute 226 360 IPR032474 -
Lan10g0480 1085 SMART PAZ_2_a_3 426 558 IPR003100 GO:0005515
Lan10g0480 1085 MobiDBLite consensus disorder prediction 1 180 - -
Lan10g0480 1085 CDD PAZ_argonaute_like 421 535 - -
Lan10g0480 1085 SMART DUF1785_2 369 421 IPR014811 -
Lan10g0480 1085 Pfam Mid domain of argonaute 619 694 IPR032473 -
Lan10g0480 1085 Gene3D paz domain 415 540 - -
Lan10g0480 1085 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 111 1084 - -
Lan10g0480 1085 Pfam Piwi domain 711 1030 IPR003165 GO:0003676
Lan10g0480 1085 Pfam Glycine-rich region of argonaut 109 195 IPR024357 -
Lan10g0480 1085 Gene3D - 779 1085 IPR036397 GO:0003676
Lan10g0480 1085 MobiDBLite consensus disorder prediction 156 180 - -
Lan10g0480 1085 PANTHER PROTEIN ARGONAUTE 1A 111 1084 - -
Lan10g0480 1085 Pfam PAZ domain 426 551 IPR003100 GO:0005515
Lan10g0480 1085 SUPERFAMILY Ribonuclease H-like 699 1032 IPR012337 -
Lan10g0480 1085 CDD Piwi_ago-like 580 1030 IPR045246 -
Lan10g0480 1085 MobiDBLite consensus disorder prediction 196 215 - -
Lan10g0480 1085 ProSiteProfiles Piwi domain profile. 710 1031 IPR003165 GO:0003676
Lan10g0480 1085 Pfam Argonaute linker 2 domain 562 608 IPR032472 -
Lan10g0480 1085 SUPERFAMILY PAZ domain 228 573 IPR036085 GO:0005515
Lan10g0480 1085 ProSiteProfiles PAZ domain profile. 422 536 IPR003100 GO:0005515
Lan10g0480 1085 SMART Piwi_a_2 710 1031 IPR003165 GO:0003676
Lan10g0480 1085 Pfam Argonaute linker 1 domain 370 420 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0480 Lan-Chr10 3682477 3690352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0480 142 1085 Eukaryotic Initiation Factors Gene Family AT1G48410 81.098 0.0 1596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0480 K11593 - gmx:100780375 1712.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0480 10 3682477 3690352 Lan3g0395 3 3016369 3023875 LSH