Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0479 ATGTCACCAGTAGGATTACCACCTGGTTTTAGGTTCCATCCAACTGATGAAGAACTTGTGAACTATTATCTGAAGAGGAAGATAAATGGCTTAGAAATTGAACTTGATATCATTCCTCAGGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAGAAATCATTTTTACCAAGTAGAGACCCAGAGTGGTACTTCTTTGGACCCAGGGACAGGAAATACCCAAATGGGTTCAGAACAAATAGAGCAACTAGAGCAGGGTATTGGAAATCAACAGGGAAAGATAGGAAGGTTTCATGCCAAAGCAGACATATTGGTATGAAGAAAACTTTGGTTTATTATAGAGGTAGAGCTCCTCAAGGTATCAGAACTGATTGGGTTATGCATGAATATCGCCTTGATGATAAAGAGTGTGAAGACAACTCTGGATTACAGGACACATATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATATGTTCAGATATTGAAGAGCAAGGGCAATGTAGTATGTCATCACTAATTGAGAGCTCTCAAACCATAATCAATGAGTGTGAGACTATGTCTCCTGACATAGTAGGAGCATCATCTTCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCAAAGGTTGGTGGTGAAGAAGTCTCACATGTTACATTTACACACTAA 717 0.3933 MSPVGLPPGFRFHPTDEELVNYYLKRKINGLEIELDIIPQVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRHIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGLQDTYALCRVFKKNGICSDIEEQGQCSMSSLIESSQTIINECETMSPDIVGASSSCLEEEDKDDSWMQFITEDAWYSSNAAKVGGEEVSHVTFTH* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0479 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Lan10g0479 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 237 - -
Lan10g0479 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lan10g0479 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 237 - -
Lan10g0479 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Lan10g0479 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0479 Lan-Chr10 3664621 3668485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0479 1 227 NAC Transcription Factor Family AT3G17730 75.934 5.57e-132 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan10g0479 NAM 3.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0479 - - gmx:100784495 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0479 10 3664621 3668485 Lan10g0479 10 3664621 3668485 ECH
Lan10g0479 10 3664621 3668485 Lan3g0394 3 2980133 2984031 LSH