Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0476 ATGATGAAAGGGCTAGAAATAGGTTCATTTTGGAGATTATTCTTTAAGTGTTTCAATGCTCTTGCTGAAGTTTTTAGAAGCCATTCAGTGAGGGGTTCAGAAATGCAGTGGTCATTCTCAAACAAGGGCTCAGGCCTTTCTCAACATTTGTCACTAAAGGGCATTCAGGAAGATAGACAAAGAAAGACTGTTCTTGATTCAATAGCTTCATCTGGATATATGACCATATCATCAAATAAGGATGCTTTTATGTCTACCCAGAAACCATTCTCTAGTGTGAGAAAACATGGAATCACAGTCTATCCACAACAATGTTTTGATGCACATTCATCTAGCCATCAGGAATCAGTAATCTTTTCAGTTTCAAACCAATCAAATCAAGCTAGTCCTGTTCTTCAATCTAGTCTTACTAATACCGGATCGAAAATGATCAATTCAGCCATAAAACCACAACCTTTTGGTTCCAAATCCTCTGCCACACCTGTATCTGCCCTTCCATCTATAGGCTGCATTGTTGGCTCTACTGACTTAAGGAATTCTTCCAAATCCTCTGTCACACCTGCTCAGCTGACCATTTTCTATGGTGGTTCTGTATGTGTTTATGATGATGTATCGCCTGAGAAGGCTCAAGCTATCATGTTACTAGCTGGAAATGGTACAAAACCAATTCAGAACATGACACTTTCCACACCGAAATTGCAATCAGAAATCACCACTCACTCCAATGATGATTGTATCATTATAGGCCAATCCTTTCCCTCACCCCTGCCAAGCCCTCTCCCATTGACCTCTCGCGCCGCTTCTCGGCCATGTGTTGGATCTTCTAGCAGCAATGAACTCACAATGCTAAGACCAACAGGACCTTCAACTACCCCTAGTAACCATTTGCAATCTCCTAAAGTTGTTGGTTCTGCAGCTACAAAAATGGTTCAACAAGTTGGTGGCTTGCCTCAGGCACGAAAAGCATCTTTAGCTCGATTTTTGGAGAAGCGAAAGGAAAGGGTGATTATCACATCTCCATATTATATGAACAAGAAATCACCTGAATGCAGCAATAATGGATCAAGTGGTTTTAGTTTCTCAATCACTTCCTCTGATTCTTGTCCTCTACCGGCCATTAACTAG 1125 0.4116 MMKGLEIGSFWRLFFKCFNALAEVFRSHSVRGSEMQWSFSNKGSGLSQHLSLKGIQEDRQRKTVLDSIASSGYMTISSNKDAFMSTQKPFSSVRKHGITVYPQQCFDAHSSSHQESVIFSVSNQSNQASPVLQSSLTNTGSKMINSAIKPQPFGSKSSATPVSALPSIGCIVGSTDLRNSSKSSVTPAQLTIFYGGSVCVYDDVSPEKAQAIMLLAGNGTKPIQNMTLSTPKLQSEITTHSNDDCIIIGQSFPSPLPSPLPLTSRAASRPCVGSSSSNELTMLRPTGPSTTPSNHLQSPKVVGSAATKMVQQVGGLPQARKASLARFLEKRKERVIITSPYYMNKKSPECSNNGSSGFSFSITSSDSCPLPAIN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0476 374 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 254 - -
Lan10g0476 374 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 252 374 - -
Lan10g0476 374 MobiDBLite consensus disorder prediction 269 300 - -
Lan10g0476 374 Pfam tify domain 186 217 IPR010399 -
Lan10g0476 374 SMART tify_2 183 218 IPR010399 -
Lan10g0476 374 Pfam Jas motif 317 342 IPR018467 -
Lan10g0476 374 ProSiteProfiles Tify domain profile. 183 218 IPR010399 -
Lan10g0476 374 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 252 374 IPR040390 -
Lan10g0476 374 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 254 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0476 Lan-Chr10 3587957 3591156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0476 35 347 Tify Gene Family AT3G17860 42.331 9.58e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan10g0476 tify 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0476 K13464 - gmx:100807288 372.859