Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0456 ATGGCAGAACTCGATCTATCGAAGAAAGTAGCAGACAGGTATTTGAAGCGTGAGGTCCTTGGTGAAGGTACCTATGGGGTCGTTTATAAAGCCATTGATACTCAGACAGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAGCATAAAGAAGGGGTGAATTTCACAGCTCTCAGAGAAATTAAACTCCTTAAAGAGCTTCAATATCCACATATAATTGAGTTGATAGATTCCTTCCCACATAAGGAAAATTTGCATCTTGTGTTTGAATTCATGGAAACGGATCTCGAATCTGTCATTCGAGACCGAAATATTTTTCTTTCGCCAGGCGATATCAAATCTTACATTCAAATGACACTAAATGGTCTTATGTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAATGGACAGCTGAAACTAGCAGATTTTGGTTTAGCGCGGATATTTGGAAGTCCAGACCGCAGGTTCACTCATCAGGTATTTGCTCGATGGTACAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTGCTTCTTCGCCGACCCTTTCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCTCTTGGAACTCCATCACCTTCTCAATGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCCGCCCCTCCTTTGCGCTCTTTGTTTCCAATGGCAAGTGATGATGCTCTAGATTTATTGTCAAAGATGTTTACATATGATCCAAAAGTTAGAATTTCAGCTCAGCAGGCGTTAGAGCACAGGTACTTTACTTCTGTACCTCTGCCCACAGATCCAGATAAGCTTCCAAGACCTACCCCCAAGACAGAACCTAAGGCTTCAGATTTTGATTCACATGAGGGTCCTACTGTCATTTCACCTCCGAGAAAGTCTCGGAGAGTGATGCCAGGGCGTGATGGGTTTGAAGGCAATTCTTTGCAAAGAAATAAGACTGACGACAATGTTAGTAGTTCTAGACAGAAAGCTGGTGACAATACAGGCAAGACTGATCCAGCACCAATGTCACTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAAAACACATTTAAAAAGAAAATTAGATCTAGAGTTCCTGCAGCCAGAATGA 1248 0.4151 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKHKEGVNFTALREIKLLKELQYPHIIELIDSFPHKENLHLVFEFMETDLESVIRDRNIFLSPGDIKSYIQMTLNGLMFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAALGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKVRISAQQALEHRYFTSVPLPTDPDKLPRPTPKTEPKASDFDSHEGPTVISPPRKSRRVMPGRDGFEGNSLQRNKTDDNVSSSRQKAGDNTGKTDPAPMSLDFSVFGLKPPNRPTINSADKTHLKRKLDLEFLQPE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0456 415 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Lan10g0456 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lan10g0456 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lan10g0456 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0456 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lan10g0456 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0456 415 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Lan10g0456 415 MobiDBLite consensus disorder prediction 295 400 - -
Lan10g0456 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 356 - -
Lan10g0456 415 MobiDBLite consensus disorder prediction 351 369 - -
Lan10g0456 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lan10g0456 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan10g0456 415 PANTHER CELL DIVISION PROTEIN KINASE 9 356 - -
Lan10g0456 415 MobiDBLite consensus disorder prediction 307 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0456 Lan-Chr10 3299561 3303547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0456 8 412 Core Cell Cycle Gene Families AT1G73690 74.815 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lan10g0456 Pkinase 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0456 K02202 - gmx:100814263 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0456 10 3299561 3303547 Lan3g0354 3 2582372 2586363 LSH