Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0405 ATGAATGAAAATAAGTCAAAGAAACATGACTCGAGAAAGGTTTCTGGTCTCAGCAATCAGCCTTCTAGGAAGCAACATCGGAAGGGTGAAAACCCCATGCGATTCATACCAGAGCCTGATCTGCCTTCTGGTTTTGGACATTCAAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCGGTTCTATCTAAATATGACCCATTTTGTAAAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGTCTATGGTTAGTATGCACATCTGAGTCTGCTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATCGACTGTGCCCTTCAACATGAAAAAGTCGGAGTTGTCGATCATGGGCAGCTAATGCAATTAGATGGCGGTTATTGTTGTGCATCCTGCGGCAAAGTTACTGGGATAATTGGATGTTGGAAGAAGCAGCTAAGTATAGCAAAAGATGCTCGGCGTGTAGATGTACTATGTTATAGGATATATCTGAGCTACAAGCTTCTGGATGGGACTTCGAGATTTAAAGAATTGCATGAGATGGTAAAAGAGGCAAAGACTAAACTGGAAACTGAAGTAGGTCCAGTTGATGGGGTTTCTACCAAGATGGCACGTGGCATTGTTAGCAGACTCCATATTGCAAGTGATGTACATAAACTGTGCTCTCTAGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTATTCCCAATATAAGTCCAGAATCCAGAGAGGGTTCTCTTCATGCTGCATGCAAGTTTGTTTTTGAAGAGGTAACTGCTTCGTCAGTCAAAATCATTTTAATTGAAATGCCAATTGTATCTTCGGAGCACATTAAGGGATATAAGCTCTGGTATTACAAGAGCAGGGATGAGTCGCACACAGAAGATCCTGTTTGTGTGTTTCCCAAAAATCAGAGGAGGATTTTGATATCTGACCTCCAGCCTTGCACAGAATATACTTTTCGGATTATATCTTTTACAGATATTGGTGATCTGGGTCATTCTGAGACCAAGTGTTTCACCAAAAGCATCGAAATATTGGAAAAGAATTCGTCTTCATCGGTTGCTATGAATCATAAAAAGGAGAACCTTCAAACTGGAAGCAACTCTTCTGCCTCCAAAGTGGAGCCTGATCCCAAAATGGAAGACTCTGGATTTAAGGTTGGAGACCTTGGAAAAAATTTGTGTTTTGCTTGGGCCCAAGAACAAGATTGCTTGGAGGAGTATTTCTGTGATGATAAGAAAAAATGCTGTGGACCAAGCCCAGAAGATCAGTTGCCTTCATTTTCTCGAGGGCTTGATTTAAATGTTGTTTCGATGCCTGATTTAAATGAAGAGCTTATACCTCCTTTTGAGTCTTCAAGGGATGAAGATAATGGTTGCACATTGCAGCAGGCTGTTGAGGCTGATGATAATGCTGCTTCTCATGATCTAGAGAAAAATTGTTTAACAAGATTGCATGGTAGTGGTGATTCCCAAACTGGGACTCATGGGCCAACCGCAGAAGTTCCGGCTGTTGACTCTCGCGTAGATGCATGTAGGAAAAGGATAGCAAGTACAAATGAAGAGACACCTGACTGTGACAGCACTTTGATAAATGAGTCTCCTTTATGCATACCTGATGGTTCATTGTCCTTAGATGAGAACTTTGAGTATTGTGTGAAAGTAATAAGATGGCTAGAATGTCAGGGTCATATCAAACAGGAATTCAGGTTGAAGTTGCTGACTTGGTTTAGTTTGAGGTCGACCGAGCAAGAACGTAGGGTGGTTAATACTTTCATTCAAACTCTGGTTGACGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCAGATATAATATCCAACAAGAGGCCAAGAAATGGGTTCTGTTATACAAGATTACTATTTGCTTCAAGACTTGCCATTTCACAGTGA 1938 0.4154 MNENKSKKHDSRKVSGLSNQPSRKQHRKGENPMRFIPEPDLPSGFGHSNSWICKNSACRAVLSKYDPFCKRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIDCALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGIIGCWKKQLSIAKDARRVDVLCYRIYLSYKLLDGTSRFKELHEMVKEAKTKLETEVGPVDGVSTKMARGIVSRLHIASDVHKLCSLAIEKADEWLATIPNISPESREGSLHAACKFVFEEVTASSVKIILIEMPIVSSEHIKGYKLWYYKSRDESHTEDPVCVFPKNQRRILISDLQPCTEYTFRIISFTDIGDLGHSETKCFTKSIEILEKNSSSSVAMNHKKENLQTGSNSSASKVEPDPKMEDSGFKVGDLGKNLCFAWAQEQDCLEEYFCDDKKKCCGPSPEDQLPSFSRGLDLNVVSMPDLNEELIPPFESSRDEDNGCTLQQAVEADDNAASHDLEKNCLTRLHGSGDSQTGTHGPTAEVPAVDSRVDACRKRIASTNEETPDCDSTLINESPLCIPDGSLSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLVDDPSSLAGQLVDSFSDIISNKRPRNGFCYTRLLFASRLAISQ* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0405 645 Gene3D Immunoglobulins 252 349 IPR013783 -
Lan10g0405 645 ProSiteProfiles Fibronectin type-III domain profile. 254 351 IPR003961 GO:0005515
Lan10g0405 645 PANTHER VIN3-LIKE PROTEIN 1 3 632 - -
Lan10g0405 645 MobiDBLite consensus disorder prediction 364 388 - -
Lan10g0405 645 SUPERFAMILY Fibronectin type III 260 343 IPR036116 GO:0005515
Lan10g0405 645 CDD FN3 257 346 IPR003961 GO:0005515
Lan10g0405 645 Pfam PHD - plant homeodomain finger protein 53 171 IPR032881 -
Lan10g0405 645 Pfam Fibronectin type III domain 258 338 IPR003961 GO:0005515
Lan10g0405 645 MobiDBLite consensus disorder prediction 364 380 - -
Lan10g0405 645 PANTHER VIN3-LIKE PROTEIN 2-RELATED 3 632 IPR044514 GO:0010048|GO:0040029
Lan10g0405 645 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0405 Lan-Chr10 2833643 2840751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0405 49 629 PHD Gene Family AT3G24440 49.158 5.31e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0405 - - gsj:114418583 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0273 18 4003869 4010793 Lan10g0405 10 2833643 2840751 PCT
Lan6g2245 6 32706292 32713595 Lan10g0405 10 2833643 2840751 PCT
Lan10g0405 10 2833643 2840751 Lan18g0273 18 4003869 4010793 PCT
Lan10g0405 10 2833643 2840751 Lan6g2245 6 32706292 32713595 PCT