Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0390 ATGGAGCAGAACAACGTGATAGCACCGTTTGTTATGAAGACGTACCAAATGGTCAACGATCCCATTACTGATAATCTCATAACATGGGGCCCAACTAACAACAGCTTCATCGTCCTCGACCCTCTCGATTTCTCGCAATCCCTTCTTCCTGCTTTCTTCAAACACAACAACTTCTCCAGTTTCGTTCGCCAGCTCAATACATATGGTTTCAAAAAGGTGGATCCAGATCGATGGGAATTTGCAAACGAGTGGTTTCTTCGAGGGCAGAAGCACATGTTGAAGAATATAGTGAGGAGAAAGCACTGTAGTAGGAGCTATAATTCAAAGTTTTCATCACTTTCTTCTTCAAATTCGCATTTAGGGAAATTTGAAGAGTTGAACGACGAGGATATGGTGATGGAGATAACGAGGCTAAAGGAGGAGCAGAAAGCGTTAGATGAAGAGCTTCAAGAGATGAACAAGAGGTTGGAAACAACGGAGAAAAGACCCCAACAAATGATGACTTTCTTATGCAAAGTGGTAGAGGACCCTGATGTTCTTTCTCGAACACTAATCGAGCGACAGAGAAAGCAGGTGGCGGAGAAGAAGCGGCGGTTGTTATCGGCGGCAACATCATCGTCGTCATCATCTGGTATGGCGATGAAGACAGAGTTCGAGGATGAGGAAACAACTGTAGGTAATACTATATTATCTTCCTCAGTGGAAACGGGATTTGAAATTGATAATTTTTACCATATGGCGGCGTCGCCGACACATGAAGCGGTTGCTGGCGGTGATGCAGTGGCGGTTTGGTGGAGACAGAAACAAGGGATGATGATAGGTTTGCCTACTAGGATCGTTAATGACGGATATAATTATAATGATTTTGATACTTATAATTATAATGATGATAATTACAATTGCACCGCCGCTCCGATTCCATTGATGGCGGTGACTCATTCTTCGCCGCCGTTGAACGAAAGCTATTTTGTGCATGACAATGATAGAAGTAAGGGGCATGTGGATATTTTTAGTGAAACGGCGGCGGGGAGCAGTCCACGGCCACCTTATCCGTTTTCATTATTGGAAGGTGGCTTTTAG 1080 0.4398 MEQNNVIAPFVMKTYQMVNDPITDNLITWGPTNNSFIVLDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKHMLKNIVRRKHCSRSYNSKFSSLSSSNSHLGKFEELNDEDMVMEITRLKEEQKALDEELQEMNKRLETTEKRPQQMMTFLCKVVEDPDVLSRTLIERQRKQVAEKKRRLLSAATSSSSSSGMAMKTEFEDEETTVGNTILSSSVETGFEIDNFYHMAASPTHEAVAGGDAVAVWWRQKQGMMIGLPTRIVNDGYNYNDFDTYNYNDDNYNCTAAPIPLMAVTHSSPPLNESYFVHDNDRSKGHVDIFSETAAGSSPRPPYPFSLLEGGF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0390 359 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan10g0390 359 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan10g0390 359 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan10g0390 359 Coils Coil 135 162 - -
Lan10g0390 359 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan10g0390 359 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lan10g0390 359 Gene3D - 2 100 IPR036388 -
Lan10g0390 359 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 8 296 - -
Lan10g0390 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 296 IPR027725 -
Lan10g0390 359 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan10g0390 359 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0390 Lan-Chr10 2682305 2683962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0390 6 207 HSF AT3G24520 62.136 1.04e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan10g0390 HSF_DNA-bind 6.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0390 K09419 - gmx:100794896 340.887