Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0373 ATGTCTCTGCCATTAGAACAAGGCTATGCAGCCTTACATTCAGAGCTTCCAACAATGGAAAAAACCTCTGAAAACTTTACTCATACAACTAAAGCCACTGGTAGCAGTGGCTTAAACCTTAAGGCTACTGAACTAAGATTAGGCTTGCCTGGTTCTGAATCACCAGACAGAAATGAGAATAATGTTGTGTTGTACCCTTTAAGCATGCACAACAAGTGTTTGGTTTCTGGTGCCAAAAGGGGTTTCTCAGATGCTATTGATGGTGGTTCTGGCAAGTGGGTTCTCTCTGGGAATGGTGGATCTGAGATGGGTTTGGGTAAAGATGGTAACTTGTTCTCTCCTAGGGGTGTTACTGCTGCTAAGGCTCTTGTTGGAGCTGAGTGTAGCAGCCAACAAAAAGTATCTGTTGTGAAAGATATAGTTCACTCTTCAAAACCATTGAATGATAAGAAGCCTCAGATATCTGCTACTCCTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCTACTCATCCTCAAAAGAATGATGATGATGATACAGAATCGAAGTCTGGTTGCCTTTATGTAAAAATCAGCATGGATGGTGCTCCTTACTTGAGGAAAGTGGATCTTAAAATCTTTAGCACATACAGGGAACTATCTTCAGCACTGGAAAAGATGTTTAGCTGTTTTACAATCAGTCAATGTGGTTCTCATAAGTTCAGTGAAAGCAGATTGATGGATCTCCTCCATGGTTCTGAATATGTGCTCACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTAGAGCCATGGAAAAGAGCAAAAGTCGAAACTAG 930 0.4204 MSLPLEQGYAALHSELPTMEKTSENFTHTTKATGSSGLNLKATELRLGLPGSESPDRNENNVVLYPLSMHNKCLVSGAKRGFSDAIDGGSGKWVLSGNGGSEMGLGKDGNLFSPRGVTAAKALVGAECSSQQKVSVVKDIVHSSKPLNDKKPQISATPAKEQVVGWPPIRSFRKNSMATHPQKNDDDDTESKSGCLYVKISMDGAPYLRKVDLKIFSTYRELSSALEKMFSCFTISQCGSHKFSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKSKSRN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0373 309 ProSiteProfiles PB1 domain profile. 195 291 IPR000270 GO:0005515
Lan10g0373 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 301 IPR003311 GO:0005634|GO:0006355
Lan10g0373 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 18 301 - -
Lan10g0373 309 Pfam AUX/IAA family 43 300 IPR033389 -
Lan10g0373 309 Gene3D - 189 303 - -
Lan10g0373 309 SUPERFAMILY CAD & PB1 domains 192 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0373 Lan-Chr10 2536347 2539856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0373 199 299 B3 DNA Binding Superfamily AT4G23980 30.693 1.05e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan10g0373 AUX_IAA 2.3e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0373 K14484 - gmx:100803754 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0373 10 2536347 2539856 Lan3g0298 3 2016148 2018760 LSH
Lan6g2230 6 32604263 32607633 Lan10g0373 10 2536347 2539856 PCT
Lan10g0373 10 2536347 2539856 Lan6g2230 6 32604263 32607633 PCT