Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0342 ATGAGGAAGCCAGAGCAGTGTGGTAAGAACAACAACAATAAGCTTAGGAAAGGGTTGTGGTCACCAGAAGAAGATGAAAAGCTCATGAACTACATAATAAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTAGCTTGCAAAGGTGTGGCAAAAGTTGTAGGCTTAGATGGATTAATTATTTGAGGCCTGACCTTAGAAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCAGCGCGTTTACCTGGGCGAACTGACAATGAAATCAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACACCAACATTTCAACAACCACAACCTCAGATTCACCAAAAGTATACAACCCACAGTCTCATGAGCTTAACAAAGACCACAACAACATGGGAGGGTTTATTTCTACGCAACATAATCAACATGCAGGATTCATGCCTATATTCACTTCATCTCTATCATCAACAATGCAAACAACAATGATCAACACCATGAATATTGAAGGGTTGCCTGTGCTAGATCATGGACTAAACATGCAAGTTGATGGAGGATATTTCAACGGCACAGGGCAATGCTTTGAGGATAATAACAAAGGTTTTTATTTAGAAAATGATGGGATCTTTGGGAGTGTAAATAATATTGGGATAGAAGGGGATATGTTTGTTCCTCATCTAGAGAGTGTTAATACTATTAATTCTATTGATCATAATAACCATCATAGAGTGGAGAATATAACATGCAAGAGAGAAACTAACAATAACAGTACTAACTTTGATGACAATAAGAGAAGTGAAAATAGGGTTGGGGTGGGGAATTTATTTCAAGAAGAGTTAACCATAGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCCTACTTTCCATTTCTTGACTTTTCTTGA 963 0.3842 MRKPEQCGKNNNNKLRKGLWSPEEDEKLMNYIINNGQGCWSDVARNASLQRCGKSCRLRWINYLRPDLRRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNTNISTTTTSDSPKVYNPQSHELNKDHNNMGGFISTQHNQHAGFMPIFTSSLSSTMQTTMINTMNIEGLPVLDHGLNMQVDGGYFNGTGQCFEDNNKGFYLENDGIFGSVNNIGIEGDMFVPHLESVNTINSIDHNNHHRVENITCKRETNNNSTNFDDNKRSENRVGVGNLFQEELTIGEWDLEELMKDVSYFPFLDFS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0342 320 Gene3D - 71 146 - -
Lan10g0342 320 SMART sant 16 66 IPR001005 -
Lan10g0342 320 SMART sant 69 117 IPR001005 -
Lan10g0342 320 CDD SANT 72 112 IPR001005 -
Lan10g0342 320 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lan10g0342 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lan10g0342 320 PANTHER MYB DOMAIN PROTEIN 55 6 320 - -
Lan10g0342 320 Gene3D - 14 70 - -
Lan10g0342 320 CDD SANT 20 64 IPR001005 -
Lan10g0342 320 PANTHER MYB TRANSCRIPTION FACTOR 6 320 - -
Lan10g0342 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Lan10g0342 320 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lan10g0342 320 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lan10g0342 320 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Lan10g0342 320 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0342 Lan-Chr10 2301256 2303256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0342 1 319 MYB Transcription Factor Family AT3G08500 45.773 1.71e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan10g0342 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0342 K09422 - gmx:100785810 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0342 10 2301256 2303256 Lan8g1745 8 24152085 24155170 PCT
Lan10g0342 10 2301256 2303256 Lan13g0304 13 1975412 1997398 PCT
Lan8g1745 8 24152085 24155170 Lan10g0342 10 2301256 2303256 PCT
Lan13g0304 13 1975412 1997398 Lan10g0342 10 2301256 2303256 PCT