Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0335 ATGGAGTCAGATCTCGAGCAACAACAGCATCAGGTAAATAATTCTTCATCTGGGTTAACACGTTACAAATCAGCACCAAGTTCCTATTTTACCAACATCATTGACAAGGACTTCTATGAGCACATTTTCAATCACCCTTCAAGCCCTGAAACAGAACAAATCTTCTCACGCTTTATGAATAGTATAGGTGGTAGTGATGTTATAGAAGAAGTTTCACTCACTCAGAGTTTCTCACCAGTGAAGGAAGAGATTATTATTAACCAGAAGGTGAATGATGAACCTGTAGTATGGAAGGAGCAAAAACAGCATAGTGATATTAAAAGTAATAATTATTCCCCTGCTGCTCCTACTCATGGTTTTTATCAAAGCTCTGCAAAACCACCTTTGCCAAATCAGAACCTTAACTCAGCCCATGCTGGCATCAGAGGCATGAGAAATTTAGGAGCAGCTGGTAGTAACACTATGGAAGAAGCAAAATTTTCTATTTCAAGGAGGTTGAAGAAGCAACCAAACCCCTCATCAGGGCTAATGTCAGCAATAGCTGAAATTGAGGGCAAAGGAAATAGAGAAAACAATCCAGACAATGAAGGTTTTGCTGAAAGCAATGACAATGATTATATCACAGGTTTCTGTGTTGATCCTTGGGATGATTCAAAACTATTTTCTAGTTTAAATGCAGCAGAGACTCAAACTCATTTGGTTCATCAGTTGAGTATGCCAAATACTTCATCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCATGCAAAACTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAACGTATGAGAAAACTACAAGATCTAGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTAGCTGTTCATTATATCAAAGACCTTCAAAAGGAAGTTCAGGTTCTTTCAGAATGTCAGTCTAAGTGTACCTGTTCACAAAAGCAGGATCAATAA 1026 0.3908 MESDLEQQQHQVNNSSSGLTRYKSAPSSYFTNIIDKDFYEHIFNHPSSPETEQIFSRFMNSIGGSDVIEEVSLTQSFSPVKEEIIINQKVNDEPVVWKEQKQHSDIKSNNYSPAAPTHGFYQSSAKPPLPNQNLNSAHAGIRGMRNLGAAGSNTMEEAKFSISRRLKKQPNPSSGLMSAIAEIEGKGNRENNPDNEGFAESNDNDYITGFCVDPWDDSKLFSSLNAAETQTHLVHQLSMPNTSSEMAAIEKFLQFSDSVPCKTRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVHYIKDLQKEVQVLSECQSKCTCSQKQDQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0335 341 SMART finulus 275 325 IPR011598 GO:0046983
Lan10g0335 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Lan10g0335 341 Gene3D - 270 340 IPR036638 GO:0046983
Lan10g0335 341 Pfam Helix-loop-helix DNA-binding domain 274 320 IPR011598 GO:0046983
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 228 338 - -
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 133 - -
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 135 223 - -
Lan10g0335 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 332 IPR036638 GO:0046983
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 9 133 - -
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 228 338 - -
Lan10g0335 341 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 135 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0335 Lan-Chr10 2235477 2238370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0335 1 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.386 7.70e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan10g0335 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0335 - - lang:109358074 671.774