LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan10g0297	ATGGGAAATCAGAAGCAAAAATGGACAGCGGATGAAGAAGACGCTCTCCACCGTGGAGTTCAAAAGTACGGTGCCGGAAAGTGGAAGAATATCCTTAAAGATCCCGATTTTGCCCCTTTCCTTACTTCTCGTTCCAACATCGATCTCAAGGATAAATGGCGTAATTTGAATGTTAGCAATGGTCAAGGTATCCCTAAAGATAAATCCAGAACTCCTAAGCCCAAATCAATTCTTCCTCCACCTTCACTTCCTGCTCCTGCTTCGGTTATTGCTTCTGTTCCGATTGCTGTTTCTGCTCCACAAAATGTTGTTTCTGTTAATCAGGATAAATTTGTTGATGATCTTACAAATGCTGAAGATTCCAAGAATCCTTCTCGGTACAATGCAATGGTTTTTGAAGCTCTGTCAACGATCAAAGATGTTAATGGTTCTGACGTAAGTGCTATTCTTAGTTTCATTGAGCAAAAGCATCAGGTTCCTTCAAATTTCAAAAGAGCATTAAGTACAAGGTTGAAGAGGCTTGTTAATCAAGGGAAGCTTGAAAAGGTACAAAATGGTTACATTATAAAGAAGGATGCCCCGAGTGTAACGAAATCACCATCGCCATCACCAAAACCAAAGGATGCATGGCCACGGCAATCATCAGCTTCTAGTATTTTGTCATGCAGTGAGACAGCAAGGGAAGCCGCCGCTACTGCAGCCTACAGAATTGCCGAGGCTGAGAATAAAGCGTTTTTGGCTGCTGAGGCATTTAAGGAAGTGGATAGACTCTCACAGATGGCTGAAGATAATGAGATAGTATTACGGTTGGCGACACAGATGTATGAACAAAGTTTGCGTGGTGACATTGTTCTTTTGGATTAA	864	0.419	MGNQKQKWTADEEDALHRGVQKYGAGKWKNILKDPDFAPFLTSRSNIDLKDKWRNLNVSNGQGIPKDKSRTPKPKSILPPPSLPAPASVIASVPIAVSAPQNVVSVNQDKFVDDLTNAEDSKNPSRYNAMVFEALSTIKDVNGSDVSAILSFIEQKHQVPSNFKRALSTRLKRLVNQGKLEKVQNGYIIKKDAPSVTKSPSPSPKPKDAWPRQSSASSILSCSETAREAAATAAYRIAEAENKAFLAAEAFKEVDRLSQMAEDNEIVLRLATQMYEQSLRGDIVLLD*	288

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan10g0297	287	Gene3D	-	8	82	-	-
	Lan10g0297	287	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	123	191	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan10g0297	287	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Lan10g0297	287	CDD	H15	127	183	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan10g0297	287	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Lan10g0297	287	CDD	SANT_TRF	6	57	-	-
	Lan10g0297	287	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Lan10g0297	287	PANTHER	SINGLE MYB HISTONE 4	1	286	IPR044597	GO:0003691
	Lan10g0297	287	SMART	h15plus2	121	186	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan10g0297	287	SMART	sant	4	59	IPR001005	-
	Lan10g0297	287	Pfam	linker histone H1 and H5 family	126	185	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan10g0297	287	Gene3D	-	120	209	IPR036388	-
	Lan10g0297	287	SUPERFAMILY	"Winged helix" DNA-binding domain	122	195	IPR036390	-
	Lan10g0297	287	MobiDBLite	consensus disorder prediction	56	81	-	-
	Lan10g0297	287	MobiDBLite	consensus disorder prediction	191	216	-	-
	Lan10g0297	287	PANTHER	TELOMERE REPEAT-BINDING FACTOR 4-RELATED	1	286	-	-
	Lan10g0297	287	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan10g0297	Lan-Chr10	1957117	1961395	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan10g0297	1	286	Single Myb Histone (SMH) Gene Family	AT1G72740	45.804	4.18e-73	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lan10g0297		Linker_histone	2.4e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan10g0297	K09422		-	gmx:778177	296.204